RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 NUDT15Q9NV35 164 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 ETNK2Q9NVF9 386 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 IL36GQ9NZH8 169 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 ARMCX1Q9P291 453 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 DPM3Q9P2X0 92 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 NAIPQ13075 1403 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 FGD6Q6ZV73 1430 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 PHLPP2Q6ZVD8 1323 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 PTPN23Q9H3S7 1636 aa3.41□□□□□ -1.86
PRPF39-210ENST00000556718 FER1L5A0AVI2 2057 aa3.4□□□□□ -1.86
PRPF39-210ENST00000556718 CUX1P39880 1505 aa3.4□□□□□ -1.86
PRPF39-210ENST00000556718 TRAV9-2A0A087WT02 112 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 IGHV2-70DA0A0C4DH43 119 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 LRP5LA4QPB2 252 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ZNF840PA6NDX5 716 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 SLC17A2O00624 439 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 WBP4O75554 376 aaKnown RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 RHBDL1O75783 438 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 GJB5O95377 273 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 RENP00797 406 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 IGHV3-13P01766 116 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 PIGRP01833 764 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 HOXD4P09016 255 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 SLC2A3P11169 496 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 TAGLN2P37802 199 aaKnown RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 EFNB2P52799 333 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ST3GAL3Q11203 375 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ELAVL3Q14576 367 aaKnown RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 KRTAP13-3Q3SY46 172 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 METTL11BQ5VVY1 283 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 OLFML2AQ68BL7 652 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 OR4F3Q6IEY1 312 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ZYG11AQ6WRX3 759 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ZNF600Q6ZNG1 722 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 GPRIN3Q6ZVF9 776 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 TRPM8Q7Z2W7 1104 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 SLC47A2Q86VL8 602 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 HIPK1Q86Z02 1210 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 SLC22A9Q8IVM8 553 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ZNF440Q8IYI8 595 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 LYG1Q8N1E2 194 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 DRAXINQ8NBI3 349 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 OR51G2Q8NGK0 314 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 OR5L2Q8NGL0 311 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 OR6T1Q8NGN1 323 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 OR9A4Q8NGU2 314 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 THOC2Q8NI27 1593 aaKnown RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 C17orf50Q8WW18 174 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 DYDC1Q8WWB3 177 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 LZICQ8WZA0 190 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 MRPS31Q92665 395 aaKnown RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 NT5C3BQ969T7 300 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 EFHD2Q96C19 240 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 TCEANC2Q96MN5 208 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 MCCC1Q96RQ3 725 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 CCNL2Q96S94 520 aaPredicted RBP3.4□□□□□ -1.87
PRPF39-210ENST00000556718 CCDC77Q9BR77 488 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 TM2D1Q9BX74 207 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 TSSK1BQ9BXA7 367 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 MCCC2Q9HCC0 563 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 FANCFQ9NPI8 374 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 POLE4Q9NR33 117 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 SUN2Q9UH99 717 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 GGA2Q9UJY4 613 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 ADAM28Q9UKQ2 775 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 RASD1Q9Y272 281 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 STYXL1Q9Y6J8 313 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 TTC41PQ6P2S7 1318 aa3.4□□□□□ -1.87
PRPF39-210ENST00000556718 EPRSP07814 1512 aaKnown RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 KDM5BQ9UGL1 1544 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 RPAP1Q9BWH6 1393 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 ANKRD30BQ9BXX2 1392 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 REREQ9P2R6 1566 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 IGKV6D-41A0A0C4DH26 115 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 HSFX4A0A1B0GTS1 333 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 HSFX3A0A1B0GWH4 333 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 CCT8L1PA6NM43 557 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 RS1O15537 224 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TIMM8AO60220 97 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SRPX2O60687 465 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SLC2A10O95528 541 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 PGK1P00558 417 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 HPP00738 406 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 LAMP1P11279 417 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TOP1P11387 765 aaKnown RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 PCMT1P22061 227 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 ANXA13P27216 316 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 CASP4P49662 377 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 RPL32P62910 135 aaKnown RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SERTAD2Q14140 314 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SNCBQ16143 134 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TRIM16LQ309B1 348 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TP53I3Q53FA7 332 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SFT2D3Q587I9 215 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 HHATQ5VTY9 493 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 LIPNQ5VXI9 398 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TPGS2Q68CL5 300 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 TTC19Q6DKK2 380 aaPredicted RBP3.39□□□□□ -1.87
PRPF39-210ENST00000556718 SERPINA9Q86WD7 417 aa3.39□□□□□ -1.87
PRPF39-210ENST00000556718 LRRC8AQ8IWT6 810 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms