RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 UGT2A3Q6UWM9 527 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 SLC46A3Q7Z3Q1 461 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 C1orf162Q8NEQ5 155 aaPredicted RBP14.84□□□□□ -0.03
VPS29-204ENST00000548259 FOXN4Q96NZ1 517 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 ACTRT3Q9BYD9 372 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 UPB1Q9UBR1 384 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 TRAF6Q9Y4K3 522 aa14.84□□□□□ -0.03
VPS29-204ENST00000548259 IGHV4-61A0A0C4DH41 118 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 ETV2O00321 342 aaPredicted RBP14.83□□□□□ -0.04
VPS29-204ENST00000548259 OIP5O43482 229 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 DNPH1O43598 174 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 CYP7B1O75881 506 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 H6PDO95479 791 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 CHEK2O96017 543 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 MYL2P10916 166 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 PGCP20142 388 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 HPCAL1P37235 193 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 CKAP4Q07065 602 aaKnown RBP14.83□□□□□ -0.04
VPS29-204ENST00000548259 MERTKQ12866 999 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 SCGB2A2Q13296 93 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 KIAA0040Q15053 153 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 SPDYE7PQ495Y7 208 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 OR56A1Q8NGH5 318 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 ACMSDQ8TDX5 336 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 TSSK3Q96PN8 268 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 FMO2Q99518 471 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 VRK1Q99986 396 aaPredicted RBP14.83□□□□□ -0.04
VPS29-204ENST00000548259 DCTN4Q9UJW0 460 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 TMED5Q9Y3A6 229 aa14.83□□□□□ -0.04
VPS29-204ENST00000548259 SVEP1Q4LDE5 3571 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 A0A0A6YYJ9 748 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 NPIPA5A0A0B4J1W7 369 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 NPIPA7E9PJI5 369 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 NPIPB8E9PQR5 432 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 SLCO1B7G3V0H7 640 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 ANKRD28O15084 1053 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 SNUPNO95149 360 aaKnown RBP14.82□□□□□ -0.04
VPS29-204ENST00000548259 NPIPA8P0DM63 369 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 PAX7P23759 505 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 MAGEA8P43361 318 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 RNF144AP50876 292 aaPredicted RBP14.82□□□□□ -0.04
VPS29-204ENST00000548259 CHN2P52757 468 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 PRPS1P60891 318 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 PDE7AQ13946 482 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 SWI5Q1ZZU3 235 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 NDUFAF6Q330K2 333 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 ZNF385BQ569K4 471 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 EXOSC6Q5RKV6 272 aaKnown RBP14.82□□□□□ -0.04
VPS29-204ENST00000548259 DDX59Q5T1V6 619 aaKnown RBP eCLIP14.82□□□□□ -0.04
VPS29-204ENST00000548259 BHLHB9Q6PI77 547 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 NATD1Q8N6N6 113 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 ZFAND2BQ8WV99 257 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 SORCS2Q96PQ0 1159 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 LAT2Q9GZY6 243 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 QRSL1Q9H0R6 528 aaKnown RBP14.82□□□□□ -0.04
VPS29-204ENST00000548259 RAB1BQ9H0U4 201 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 ANKZF1Q9H8Y5 726 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 DCDC2Q9UHG0 476 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 TMEFF2Q9UIK5 374 aaPredicted RBP14.82□□□□□ -0.04
VPS29-204ENST00000548259 HDGFL3Q9Y3E1 203 aa14.82□□□□□ -0.04
VPS29-204ENST00000548259 SERINC4A6NH21 518 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 VSTM5A8MXK1 200 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 ITGA2P17301 1181 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 SDC1P18827 310 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 CFPP27918 469 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 SERPINF1P36955 418 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 APOBEC1P41238 236 aaKnown RBP14.81□□□□□ -0.04
VPS29-204ENST00000548259 CCT3P49368 545 aaKnown RBP14.81□□□□□ -0.04
VPS29-204ENST00000548259 CLK1P49759 484 aaKnown RBP14.81□□□□□ -0.04
VPS29-204ENST00000548259 SESN3P58005 492 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 CASP12Q6UXS9 341 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 FRMD7Q6ZUT3 714 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 ZNF572Q7Z3I7 529 aaPredicted RBP14.81□□□□□ -0.04
VPS29-204ENST00000548259 HPS1Q92902 700 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 MOAP1Q96BY2 351 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 THUMPD3Q9BV44 507 aaKnown RBP14.81□□□□□ -0.04
VPS29-204ENST00000548259 BHLHE41Q9C0J9 482 aaPredicted RBP14.81□□□□□ -0.04
VPS29-204ENST00000548259 SLC17A5Q9NRA2 495 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 ATAD3AQ9NVI7 634 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 METRNQ9UJH8 293 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 MOKQ9UQ07 419 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 CCL27Q9Y4X3 112 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 PCDHB14Q9Y5E9 798 aa14.81□□□□□ -0.04
VPS29-204ENST00000548259 ZNF716A6NP11 495 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 TMEM114B3SHH9 223 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 B9A039 149 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 ATP6V1G2-DDX39BF2Z307 99 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 PMS2P2O95744 297 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 CSTAP01040 98 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 SLC16A1P53985 500 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 LSM12Q3MHD2 195 aaKnown RBP14.8□□□□□ -0.04
VPS29-204ENST00000548259 ZYG11AQ6WRX3 759 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 LINC01356Q8N9X3 169 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 CLHC1Q8NHS4 586 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 SGMS2Q8NHU3 365 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 ZNF563Q8TA94 476 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 OR5P2Q8WZ92 322 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 BPESC1Q9GZL8 116 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 NMUR2Q9GZQ4 415 aa14.8□□□□□ -0.04
VPS29-204ENST00000548259 OCEL1Q9H607 264 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms