RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 IL10RAQ13651 578 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 RGNQ15493 299 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 AVPI1Q5T686 147 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 LYPLAL1Q5VWZ2 237 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 Q6ZPB1 254 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 PAQR7Q86WK9 346 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 KRTCAP2Q8N6L1 136 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 OR52N2Q8NGI0 321 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 RAB7BQ96AH8 199 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CELF6Q96J87 481 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 LOXL4Q96JB6 756 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CXorf58Q96LI9 332 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 MYOCQ99972 504 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 MGME1Q9BQP7 344 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 FAIM2Q9BWQ8 316 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CACNG6Q9BXT2 260 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TRIM2Q9C040 744 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 BTBD1Q9H0C5 482 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 OPA3Q9H6K4 179 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TPT1P8Q9HAU6 139 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CACYBPQ9HB71 228 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 TAS2R5Q9NYW4 299 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 COMMD3Q9UBI1 195 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 MGAT4CQ9UBM8 478 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 METTL1Q9UBP6 276 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 LHX3Q9UBR4 397 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 FZD4Q9ULV1 537 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CAMK2AQ9UQM7 478 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ENTPD4Q9Y227 616 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SPIN1Q9Y657 262 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 ATP23Q9Y6H3 246 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 BPTFQ12830 3046 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 A4D1N5 150 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GFYI3L273 518 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GTPBP1O00178 669 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 SUSD5O60279 629 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GCM2O75603 506 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 RGS9O75916 674 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 SLC2A1P11166 492 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 EDN3P14138 238 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 JUPP14923 745 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 AMD1P17707 334 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ELK1P19419 428 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TEAD1P28347 426 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CD70P32970 193 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 THBS2P35442 1172 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CDKN2CP42773 168 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SLC6A11P48066 632 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 PNLIPRP1P54315 467 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CASP6P55212 293 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 NRG3P56975 720 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GMFBP60983 142 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 HNRNPA1L2Q32P51 320 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 CTSL3PQ5NE16 218 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 C9orf64Q5T6V5 341 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 C3orf33Q6P1S2 294 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SCIMPQ6UWF3 145 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GSG1LQ6UXU4 331 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 SLC36A4Q6YBV0 504 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 GLDNQ6ZMI3 551 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 TMUB2Q71RG4 321 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 COMTD1Q86VU5 262 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TOMM5Q8N4H5 51 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 AQP11Q8NBQ7 271 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 NEIL3Q8TAT5 605 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 APOBEC4Q8WW27 367 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 HSD17B8Q92506 261 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 MRPL48Q96GC5 212 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 PANX1Q96RD7 426 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 TEX101Q9BY14 249 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 HDAC8Q9BY41 377 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 BHLHE41Q9C0J9 482 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 POLR1EQ9GZS1 481 aaKnown RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 ANKRD19PQ9H560 264 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 NMNAT1Q9HAN9 279 aaPredicted RBP4.89□□□□□ -1.63
USP28-213ENST00000544967 INPP5EQ9NRR6 644 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 ZFP57Q9NU63 452 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 CLEC2DQ9UHP7 191 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 RAI2Q9Y5P3 530 aa4.89□□□□□ -1.63
USP28-213ENST00000544967 A0A0D9SG52 128 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TMEM218A2RU14 115 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 C5orf58C9J3I9 102 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LRRN3E7EW58 273 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TAPBPO15533 448 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LRRTM2O43300 516 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 LCMT2O60294 686 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 CD1AP06126 327 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 AVPR2P30518 371 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 AGTR1P30556 359 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CCR7P32248 378 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 EIF2S3P41091 472 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 RPL35P42766 123 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 CAMLGP49069 296 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 DGKEP52429 567 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 CDH12P55289 794 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RAC3P60763 192 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 RPS26P62854 115 aaKnown RBP4.88□□□□□ -1.63
USP28-213ENST00000544967 CDK5Q00535 292 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 TCF15Q12870 199 aa4.88□□□□□ -1.63
USP28-213ENST00000544967 GRM7Q14831 915 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms