RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 ACTC1P68032 377 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ACTA1P68133 377 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 PDZK1IP1Q13113 114 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 TDGQ13569 410 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 GLYR1Q49A26 553 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 GGTA1PQ4G0N0 100 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 GLT8D1Q68CQ7 371 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 NDUFAF7Q7L592 441 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 TMEM173Q86WV6 379 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 LRRC56Q8IYG6 542 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 OR6N2Q8NGY6 317 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF480Q8WV37 535 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 DVL3Q92997 716 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 GLYATL1Q969I3 302 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 JSRP1Q96MG2 331 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 RNF32Q9H0A6 362 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ISG20L2Q9H9L3 353 aaKnown RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 DLL4Q9NR61 685 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 WSB2Q9NYS7 404 aaPredicted RBP13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ABRACLQ9P1F3 81 aa13.29□□□□□ -0.28
LIMS1-215ENST00000544547 ALPK2Q86TB3 2170 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 GRXCR1A8MXD5 290 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 RBMXL2O75526 392 aaKnown RBP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 RBM39Q14498 530 aaKnown RBP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 TEAD2Q15562 447 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 SLC25A35Q3KQZ1 300 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 OR10R2Q8NGX6 335 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 SLC22A12Q96S37 553 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 DPH7Q9BTV6 452 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 SEMA4CQ9C0C4 833 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF254O75437 659 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 PTHLHP12272 177 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 MAOBP27338 520 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 PRSS3P35030 304 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 TSPAN31Q12999 210 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 FIGNL1Q6PIW4 674 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 RSPO2Q6UXX9 243 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 MEPCEQ7L2J0 689 aaKnown RBP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 NUP54Q7Z3B4 507 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 LIMS2Q7Z4I7 341 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 TPRA1Q86W33 373 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 CLSTN3Q9BQT9 956 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 FTSJ1Q9UET6 329 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 CCDC88CQ9P219 2028 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 SGK494L7N484 410 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 FGF18O76093 207 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 RAB3DO95716 219 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 ACHEP22303 614 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 S100GP29377 79 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 KCNJ5P48544 419 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 CCR9P51686 369 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 EIF5AP63241 154 aaKnown RBP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF628Q5EBL2 1059 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 HACD4Q5VWC8 232 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 KIAA1211LQ6NV74 962 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 TRILQ7L0X0 811 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 DCUN1D4Q92564 292 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF578Q96N58 590 aaPredicted RBP13.28□□□□□ -0.28
LIMS1-215ENST00000544547 ARHGAP9Q9BRR9 750 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 C1GALT1Q9NS00 363 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 NRXN2Q9P2S2 1712 aa13.28□□□□□ -0.28
LIMS1-215ENST00000544547 NPIPA5A0A0B4J1W7 369 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 LRIT2A6NDA9 550 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 ANKRD61A6NGH8 418 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 NPIPA7E9PJI5 369 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 NPIPA8P0DM63 369 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 CBX5P45973 191 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 OR3A2P47893 321 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 TAS2R38P59533 333 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 UBE2IP63279 158 aaKnown RBP13.27□□□□□ -0.28
LIMS1-215ENST00000544547 PDSS1Q5T2R2 415 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 OR2L3Q8NG85 312 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 ACOT11Q8WXI4 607 aaPredicted RBP13.27□□□□□ -0.28
LIMS1-215ENST00000544547 MSLNLQ96KJ4 702 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 TMEM38AQ9H6F2 299 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 ASB6Q9NWX5 421 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 PCM1Q15154 2024 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 CDHR4A6H8M9 788 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF860A6NHJ4 632 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 ZNF98A6NK75 572 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 B4DGG1 531 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 YOD1Q5VVQ6 348 aaPredicted RBP13.27□□□□□ -0.28
LIMS1-215ENST00000544547 WDSUB1Q8N9V3 476 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 UBTD2Q8WUN7 234 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 ABHD1Q96SE0 405 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 PDCD1LG2Q9BQ51 273 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 GPR174Q9BXC1 333 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 SLC6A17Q9H1V8 727 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 SPATA6Q9NWH7 488 aaPredicted RBP13.27□□□□□ -0.28
LIMS1-215ENST00000544547 V9GY05 133 aa13.27□□□□□ -0.28
LIMS1-215ENST00000544547 A0A087WUU8 490 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 TLX3O43711 291 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-215ENST00000544547 LANCL1O43813 399 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 LEFTY1O75610 366 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 CFDP00746 253 aaPredicted RBP13.27□□□□□ -0.29
LIMS1-215ENST00000544547 ATP1B1P05026 303 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 CCKBRP32239 447 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 DEFA6Q01524 100 aa13.27□□□□□ -0.29
LIMS1-215ENST00000544547 RIPPLY1Q0D2K3 151 aa13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms