RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 PITPNBP48739 271 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 CLCNKAP51800 687 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 P2RY14Q15391 338 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 MLF2Q15773 248 aaPredicted RBP7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 Q5PR19 223 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 ARHGAP40Q5TG30 622 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 LCTLQ6UWM7 567 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 FAM92BQ6ZTR7 304 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 ASB18Q6ZVZ8 466 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 GPR155Q7Z3F1 870 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 FAM129CQ86XR2 697 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 TMEM132CQ8N3T6 1108 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF561Q8N587 486 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC5A8Q8N695 610 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 TRMT10AQ8TBZ6 339 aaKnown RBP7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 SPPL2AQ8TCT8 520 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 TFGQ92734 400 aaPredicted RBP7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 NARS2Q96I59 477 aaKnown RBP7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 CCDC74BQ96LY2 380 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 IL4I1Q96RQ9 567 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 CPPED1Q9BRF8 314 aaPredicted RBP7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 HDHD2Q9H0R4 259 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 HHATLQ9HCP6 504 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 SERINC1Q9NRX5 453 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 TAS2R3Q9NYW6 316 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 EPHA6Q9UF33 1036 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 WASF3Q9UPY6 502 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 ASF1AQ9Y294 204 aa7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 CFAP20Q9Y6A4 193 aaKnown RBP7.43□□□□□ -1.22
PDLIM5-221ENST00000542407 NUP214P35658 2090 aaPredicted RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 A0A1W2PPL8 197 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 RPS10-NUDT3A0A1W2PQS6 291 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 YY2O15391 372 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 DPM1O60762 260 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TBX6O95947 436 aaPredicted RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 SYPP08247 313 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 SBK2P0C263 348 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TNFRSF1BP20333 461 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CDKN2CP42773 168 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 GMFBP60983 142 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 KHDRBS1Q07666 443 aaKnown RBP eCLIP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 SLBPQ14493 270 aaKnown RBP eCLIP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 GFOD2Q3B7J2 385 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PABPC1L2AQ5JQF8 200 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 MED27Q6P2C8 311 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CHRDL2Q6WN34 429 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 C17orf107Q6ZR85 190 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CALHM3Q86XJ0 350 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CMIPQ8IY22 773 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF655Q8N720 491 aaPredicted RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CREB3L4Q8TEY5 395 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 GTPBP3Q969Y2 492 aaKnown RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 FOXRED1Q96CU9 486 aaPredicted RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TIMM29Q9BSF4 260 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CRB3Q9BUF7 120 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PDCD10Q9BUL8 212 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 POLR2J2Q9GZM3 115 aaKnown RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 EVA1AQ9H8M9 152 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 FZD3Q9NPG1 666 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 DMRT3Q9NQL9 472 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PRDM7Q9NQW5 492 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 FZD4Q9ULV1 537 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 EXO1Q9UQ84 846 aaKnown RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PLXND1Q9Y4D7 1925 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 OR2AT4A6NND4 320 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 C22orf46C9J442 243 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TNFRSF11BO00300 401 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 DRD1P21728 446 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 S100A3P33764 101 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 SDC2P34741 201 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PRRX1P54821 245 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 MAZP56270 477 aaKnown RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CLDN20P56880 219 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 RPS13P62277 151 aaKnown RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC5A12Q1EHB4 618 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 KLHL22Q53GT1 634 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CLLU1Q5K131 121 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PRAMEF14Q5SWL7 426 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PRAMEF13Q5VWM6 474 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 RPL13AP3Q6NVV1 102 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 FAHD1Q6P587 224 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CNIH2Q6PI25 160 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 VHLLQ6RSH7 139 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF551Q7Z340 670 aaPredicted RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 REC114Q7Z4M0 266 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 SLC44A3Q8N4M1 653 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 C1orf52Q8N6N3 182 aaKnown RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TMEM145Q8NBT3 493 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 MRGPRX1Q96LB2 322 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 WDFY2Q96P53 400 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 EFCAB11Q9BUY7 163 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 ANKRA2Q9H9E1 313 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PHPT1Q9NRX4 125 aaPredicted RBP7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TMEM184CQ9NVA4 438 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CD207Q9UJ71 328 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 KCND3Q9UK17 655 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 TP53TG5Q9Y2B4 290 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 CA5BQ9Y2D0 317 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 PLEKHM1Q9Y4G2 1056 aa7.42□□□□□ -1.22
PDLIM5-221ENST00000542407 ZNF670-ZNF695F2Z2N8 137 aa7.41□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms