RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 KRT8P05787 483 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 ELK1P19419 428 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 HTR1FP30939 366 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 MRPS15P82914 257 aaKnown RBP15.58■□□□□ 0.09
USP28-208ENST00000540438 GAS6Q14393 721 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 C1orf189Q5VU69 101 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 KRT74Q7RTS7 529 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 SAMD12Q8N8I0 201 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 BMPERQ8N8U9 685 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 ZNF485Q8NCK3 441 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 OR4D9Q8NGE8 314 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 CHAC2Q8WUX2 184 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 TEX12Q9BXU0 123 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 FOLH1BQ9HBA9 442 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 ZNF223Q9UK11 482 aaPredicted RBP15.58■□□□□ 0.09
USP28-208ENST00000540438 EXOSC1Q9Y3B2 195 aaKnown RBP15.58■□□□□ 0.09
USP28-208ENST00000540438 UGT2A1Q9Y4X1 527 aa15.58■□□□□ 0.09
USP28-208ENST00000540438 A0A075B6Q4 140 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 IGHV5-51A0A0C4DH38 117 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 A0A1B0GTH9 108 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 TMEM129A0AVI4 362 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 GTPBP1O00178 669 aaKnown RBP15.58■□□□□ 0.08
USP28-208ENST00000540438 BRINP1O60477 761 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 DOK2O60496 412 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 HTR3AP46098 478 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 AGAP6Q5VW22 663 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 OR5M10Q6IEU7 315 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 TTLL10Q6ZVT0 673 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 MEPCEQ7L2J0 689 aaKnown RBP15.58■□□□□ 0.08
USP28-208ENST00000540438 PIGKQ92643 395 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 SLC35B4Q969S0 331 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 ZFP3Q96NJ6 502 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 AGAP4Q96P64 663 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 ATF6BQ99941 703 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 N6AMT1Q9Y5N5 214 aa15.58■□□□□ 0.08
USP28-208ENST00000540438 SPTY2D1-AS1A0A0U1RR47 76 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 TMEM221A6NGB7 291 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 AKAP8O43823 692 aaKnown RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 SELENOFO60613 162 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 RAD1O60671 282 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ZNF10P21506 573 aaPredicted RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 CDC20Q12834 499 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 GLYR1Q49A26 553 aaPredicted RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 RAB43Q86YS6 212 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 OR5W2Q8NH69 310 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 C16orf52Q8NHV5 167 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 KLHDC7BQ96G42 594 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 DEPDC7Q96QD5 511 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 GSDMCQ9BYG8 508 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 UCKL1Q9NWZ5 548 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 C2orf72A6NCS6 295 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 POLR1CO15160 346 aaPredicted RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 RNF13O43567 381 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 FOXS1O43638 330 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 DYRK3O43781 588 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 IL1AP01583 271 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 WNT1P04628 370 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ATP1B1P05026 303 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 PTHLHP12272 177 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ENDOUP21128 410 aaKnown RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 CLDN12P56749 244 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 SCN1BQ07699 218 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ZNF511Q8NB15 262 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 CEP76Q8TAP6 659 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 THAP3Q8WTV1 239 aaPredicted RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 SMPDL3BQ92485 455 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 TSLPQ969D9 159 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 KISS1RQ969F8 398 aaPredicted RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 CDCA3Q99618 268 aaPredicted RBP15.57■□□□□ 0.08
USP28-208ENST00000540438 FOXQ1Q9C009 403 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 FKRPQ9H9S5 495 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 EXTL2Q9UBQ6 330 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 PCOLCE2Q9UKZ9 415 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ZMIZ1Q9ULJ6 1067 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 RASD1Q9Y272 281 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 TNFSF14O43557 240 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 LYPD3O95274 346 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 DRD1P21728 446 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 INPP1P49441 399 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 UBXN2BQ14CS0 331 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 TRIQKQ629K1 86 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 TMEM53Q6P2H8 277 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 KANSL1Q7Z3B3 1105 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ENKURQ8TC29 256 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 GPBAR1Q8TDU6 330 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 SLC38A3Q99624 504 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 SLC25A18Q9H1K4 315 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 ASB6Q9NWX5 421 aa15.57■□□□□ 0.08
USP28-208ENST00000540438 CCDC182A6NF36 153 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 PLOD3O60568 738 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 CSTAP01040 98 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 SYPP08247 313 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 TSFMP43897 325 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 UBE2IP63279 158 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 SFSWAPQ12872 951 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 LINC00299Q6ZSB3 139 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 SERPINA12Q8IW75 414 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 LINC00471Q8N535 108 aa15.56■□□□□ 0.08
USP28-208ENST00000540438 C19orf47Q8N9M1 422 aaKnown RBP15.56■□□□□ 0.08
USP28-208ENST00000540438 MINDY2Q8NBR6 621 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms