RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 IQCCQ4KMZ1 466 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 KRTCAP3Q53RY4 240 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 PLXDC2Q6UX71 529 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 Q6ZPB1 254 aaPredicted RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 VTCN1Q7Z7D3 282 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 GGNQ86UU5 652 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 LILRA2Q8N149 483 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 GTPBP8Q8N3Z3 284 aaPredicted RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 RPRMLQ8N4K4 120 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 OR6T1Q8NGN1 323 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 OR14L1PQ8NHC6 308 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 PHF10Q8WUB8 498 aaKnown RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 LRTOMTQ8WZ04 291 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 CENPNQ96H22 339 aaPredicted RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 WDYHV1Q96HA8 205 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 TPD52L3Q96J77 140 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 TIMP4Q99727 224 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 BDH2Q9BUT1 245 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 VCX3BQ9H321 246 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 CACYBPQ9HB71 228 aaKnown RBP11.73□□□□□ -0.53
CCDC42-202ENST00000539522 IL1RAPQ9NPH3 570 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 PNPLA3Q9NST1 481 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 B4GALT7Q9UBV7 327 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 DKKL1Q9UK85 242 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 BAG5Q9UL15 447 aa11.73□□□□□ -0.53
CCDC42-202ENST00000539522 CLOCKO15516 846 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 LDLRP01130 860 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 SEMG1P04279 462 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 VHLP40337 213 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 IDH2P48735 452 aaKnown RBP11.72□□□□□ -0.53
CCDC42-202ENST00000539522 CCR4P51679 360 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 CLDN20P56880 219 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 SRSF1Q07955 248 aaKnown RBP eCLIP11.72□□□□□ -0.53
CCDC42-202ENST00000539522 CBFBQ13951 182 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 LARS2Q15031 903 aaKnown RBP11.72□□□□□ -0.53
CCDC42-202ENST00000539522 TOMM20Q15388 145 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 ATP6AP1Q15904 470 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 CTU2Q2VPK5 515 aaKnown RBP11.72□□□□□ -0.53
CCDC42-202ENST00000539522 GLYR1Q49A26 553 aaPredicted RBP11.72□□□□□ -0.53
CCDC42-202ENST00000539522 RTL6Q6ICC9 239 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 GFRALQ6UXV0 394 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 PIWIL3Q7Z3Z3 882 aaKnown RBP11.72□□□□□ -0.53
CCDC42-202ENST00000539522 GHDCQ8N2G8 530 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 TMCO5AQ8N6Q1 288 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 ADGRG7Q96K78 797 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 ADAM19Q9H013 955 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 HHATLQ9HCP6 504 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 ACER3Q9NUN7 267 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 DNAJB9Q9UBS3 223 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 RIMS3Q9UJD0 308 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF232Q9UNY5 417 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 V9GYQ6 96 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 ARHGAP21Q5T5U3 1957 aa11.72□□□□□ -0.53
CCDC42-202ENST00000539522 POLEQ07864 2286 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 A0A087WZY1 265 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 NPIPA2E9PIF3 369 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 NPIPA3F8WFD2 350 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 SYT5O00445 386 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 DEAF1O75398 565 aaPredicted RBP11.71□□□□□ -0.53
CCDC42-202ENST00000539522 OPN1LWP04000 364 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF708P17019 499 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ZNF17P17021 662 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ITGA2P17301 1181 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 CHMP24386 653 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 OR1E2P47887 323 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ZSWIM7Q19AV6 140 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 IFI44LQ53G44 452 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ARHGAP11AQ6P4F7 1023 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 SEM1Q6ZVN7 128 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 NCCRP1Q6ZVX7 275 aaPredicted RBP11.71□□□□□ -0.53
CCDC42-202ENST00000539522 PLEKHM3Q6ZWE6 761 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 AMIGO2Q86SJ2 522 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ADGRG3Q86Y34 549 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 DOLPP1Q86YN1 238 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 MARVELD2Q8N4S9 558 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 GALNT11Q8NCW6 608 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 FAM57AQ8TBR7 257 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 NRG4Q8WWG1 115 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 SLC35B4Q969S0 331 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 RELTQ969Z4 430 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 ZBTB8AQ96BR9 441 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 C3orf49Q96BT1 292 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 HSH2DQ96JZ2 352 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 PRDM14Q9GZV8 571 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 PTGES2Q9H7Z7 377 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 CTPS2Q9NRF8 586 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 TINAGQ9UJW2 476 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 FAM215AQ9Y5M1 114 aa11.71□□□□□ -0.53
CCDC42-202ENST00000539522 GCN1Q92616 2671 aaKnown RBP11.71□□□□□ -0.54
CCDC42-202ENST00000539522 GNGT2O14610 69 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 SLC19A2O60779 497 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 CST1P01037 141 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 FABP3P05413 133 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 KLK2P20151 261 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 PTGS2P35354 604 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 MAGEA2P43356 314 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 ZNF41P51814 821 aaPredicted RBP11.7□□□□□ -0.54
CCDC42-202ENST00000539522 TRIP10Q15642 601 aa11.7□□□□□ -0.54
CCDC42-202ENST00000539522 EIF2S3LQ2VIR3 472 aaKnown RBP11.7□□□□□ -0.54
CCDC42-202ENST00000539522 GXYLT1Q4G148 440 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms