RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 ZNF716A6NP11 495 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 H7C417 338 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 PHF1O43189 567 aaPredicted RBP11.95□□□□□ -0.5
SS18-204ENST00000539244 NPHS1O60500 1241 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 SHBGP04278 402 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 CHRNGP07510 517 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 DHRS4L1P0CG22 281 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 CD40P25942 277 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 CCR4P51679 360 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 PTGR1Q14914 329 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 SPDYE7PQ495Y7 208 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 SYT14P1Q58G82 188 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 AP1ARQ63HQ0 302 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 BHLHB9Q6PI77 547 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 KLHL17Q6TDP4 642 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 RIMKLAQ8IXN7 391 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 MUC15Q8N387 334 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 FAM71CQ8NEG0 241 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 OR5D16Q8NGK9 328 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 OR2W6PQ8NHA6 318 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 OIT3Q8WWZ8 545 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 BHLHE41Q9C0J9 482 aaPredicted RBP11.95□□□□□ -0.5
SS18-204ENST00000539244 ZNF350Q9GZX5 532 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 SERINC1Q9NRX5 453 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 MKS1Q9NXB0 559 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 TAS2R16Q9NYV7 291 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 MALT1Q9UDY8 824 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 KCNE5Q9UJ90 142 aa11.95□□□□□ -0.5
SS18-204ENST00000539244 HEATR1Q9H583 2144 aaKnown RBP11.95□□□□□ -0.5
SS18-204ENST00000539244 CENPVL1A0A0U1RR11 272 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 DUXAA6NLW8 204 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 SULT2B1O00204 365 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 DNPH1O43598 174 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 STX11O75558 287 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 RAD51DO75771 328 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 UGT2B17O75795 530 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 GUSBP08236 651 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 PGCP20142 388 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 PRPS1L1P21108 318 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 PTNP21246 168 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 THBS2P35442 1172 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 SLC16A1P53985 500 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 HBA1P69905 142 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 RAB35Q15286 201 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 C6orf136Q5SQH8 315 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 OR7E24Q6IFN5 339 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 ZNF544Q6NX49 715 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 B3GLCTQ6Y288 498 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 FBXL14Q8N1E6 418 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 PROX1Q92786 737 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 APH1AQ96BI3 265 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 MUS81Q96NY9 551 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 PRPF18Q99633 342 aaKnown RBP11.94□□□□□ -0.5
SS18-204ENST00000539244 AMBRA1Q9C0C7 1298 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 SERHL2Q9H4I8 314 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 EML4Q9HC35 981 aaKnown RBP11.94□□□□□ -0.5
SS18-204ENST00000539244 ACER3Q9NUN7 267 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 LPAR3Q9UBY5 353 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 GIMAP2Q9UG22 337 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 NOSIPQ9Y314 301 aaKnown RBP11.94□□□□□ -0.5
SS18-204ENST00000539244 ANK2Q01484 3957 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 ARFGEF3Q5TH69 2177 aa11.94□□□□□ -0.5
SS18-204ENST00000539244 CIB4A0PJX0 185 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 PDLIM1O00151 329 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 GPR171O14626 319 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 FCMRO60667 390 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 PEX11AO75192 247 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 PMS2P2O95744 297 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 CSTAP01040 98 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 CSF3P09919 207 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 FKBP2P26885 142 aaKnown RBP11.93□□□□□ -0.5
SS18-204ENST00000539244 NTF4P34130 210 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 PGM1P36871 562 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 APOBEC1P41238 236 aaKnown RBP11.93□□□□□ -0.5
SS18-204ENST00000539244 CASP9P55211 416 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 SPOCK1Q08629 439 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 MERTKQ12866 999 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 GPR68Q15743 365 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 GABRA6Q16445 453 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 ARHGAP11BQ3KRB8 267 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 ATP6AP1LQ52LC2 224 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 C1QTNF12Q5T7M4 302 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 IL23RQ5VWK5 629 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 SLC22A25Q6T423 547 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 EIF3MQ7L2H7 374 aaKnown RBP11.93□□□□□ -0.5
SS18-204ENST00000539244 C4orf33Q8N1A6 199 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 KRTCAP2Q8N6L1 136 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 ZNF525Q8N782 197 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 EIF1ADQ8N9N8 165 aaKnown RBP11.93□□□□□ -0.5
SS18-204ENST00000539244 OR52N5Q8NH56 324 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 OR5AK3PQ8NH89 298 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 PIGXQ8TBF5 258 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 MIPOL1Q8TD10 442 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 C10orf105Q8TEF2 133 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 FAM168AQ92567 244 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 ZHX1-C8orf76Q96EF9 292 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 C3orf30Q96M34 536 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 INPP5KQ9BT40 448 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 DUSP26Q9BV47 211 aa11.93□□□□□ -0.5
SS18-204ENST00000539244 CCDC106Q9BWC9 280 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms