RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 ACTR3BQ9P1U1 418 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC7A8Q9UHI5 535 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SLC13A4Q9UKG4 626 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 MKLN1Q9UL63 735 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 POMPQ9Y244 141 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 MED12Q93074 2177 aa11.28□□□□□ -0.6
CLSTN3-208ENST00000538933 SCDO00767 359 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 TP53I11O14683 189 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 PHF1O43189 567 aaPredicted RBP11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ABCB7O75027 752 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 PGM3O95394 542 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 IL33O95760 270 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF682O95780 498 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 IFNA2P01563 188 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 IL2RAP01589 272 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ETS2P15036 469 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 IL7RP16871 459 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 PNLIPRP2P54317 469 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 CHRNEQ04844 493 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 LARS2Q15031 903 aaKnown RBP11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 NSUN5P2Q63ZY6 315 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 PGM2L1Q6PCE3 622 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 OLIG3Q7RTU3 272 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 SPATA24Q86W54 205 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ARMC8Q8IUR7 673 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF527Q8NB42 609 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 BHLHE22Q8NFJ8 381 aaPredicted RBP11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 RASSF5Q8WWW0 418 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 LZICQ8WZA0 190 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 DIO2Q92813 273 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 TMCO6Q96DC7 493 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 RSRC1Q96IZ7 334 aaKnown RBP11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 TIMP4Q99727 224 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF350Q9GZX5 532 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 HOXD1Q9GZZ0 328 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 SLC6A15Q9H2J7 730 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ARMC7Q9H6L4 198 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 EXO5Q9H790 373 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 MTHFD2LQ9H903 347 aaPredicted RBP11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 PROK2Q9HC23 129 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 RPS6KA6Q9UK32 745 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF232Q9UNY5 417 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 PKD1L1Q8TDX9 2849 aa11.27□□□□□ -0.61
CLSTN3-208ENST00000538933 NPIPA5A0A0B4J1W7 369 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 LRRC3CA6NJW4 275 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 DEFB108AA8MXU0 73 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 NPIPA7E9PJI5 369 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 M0QX08 132 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 FCMRO60667 390 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 PPM1BO75688 479 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 UTS2O95399 124 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 IL18BPO95998 194 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 SERPINA1P01009 418 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 OPN1SWP03999 348 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 DBIP07108 87 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 NPIPA8P0DM63 369 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 NID1P14543 1247 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 PAX1P15863 534 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 NAGAP17050 411 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 CTSSP25774 331 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 LCN1P31025 176 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 KDELR2P33947 212 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 PTH2RP49190 550 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 CRYZQ08257 329 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 FUT5Q11128 374 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 MTX3Q5HYI7 312 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 ZNF311Q5JNZ3 666 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 TYW3Q6IPR3 259 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 FRRS1Q6ZNA5 592 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 FKBP9P1Q75LS8 142 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 DND1Q8IYX4 353 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 WDR60Q8WVS4 1066 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 PMM1Q92871 262 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 SPACA9Q96E40 222 aaPredicted RBP11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 TPD52L3Q96J77 140 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 RNF145Q96MT1 663 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 TBL1XR1Q9BZK7 514 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 SLC38A1Q9H2H9 487 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 BCL2L10Q9HD36 194 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 KLHL28Q9NXS3 571 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 GALNT8Q9NY28 637 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 SAMD4AQ9UPU9 718 aaKnown RBP11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 IFT52Q9Y366 437 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 V9GYQ6 96 aa11.26□□□□□ -0.61
CLSTN3-208ENST00000538933 PRAMEF27A3QJZ7 478 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 MBD3L3A6NE82 208 aaPredicted RBP11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 OR6C70A6NIJ9 312 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 CD8B2A6NJW9 211 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 EEF1E1-BLOC1S5C9J1V9 151 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 H3BNH8 94 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 EEF1E1O43324 174 aaKnown RBP11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 KIAA0513O60268 411 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 TSPAN2O60636 221 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 IGKV1D-16P01601 117 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 P04436 131 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 CYP4B1P13584 511 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 ATP6V1B2P21281 511 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 FPR1P21462 350 aa11.25□□□□□ -0.61
CLSTN3-208ENST00000538933 OPRM1P35372 400 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms