RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 RIT1Q92963 219 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 SLC38A4Q969I6 547 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 COPS4Q9BT78 406 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 ALOXE3Q9BYJ1 711 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 AMBNQ9NP70 447 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 NTNG1Q9Y2I2 539 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 SPTAN1Q13813 2472 aaKnown RBP10.94□□□□□ -0.66
CLIP1-208ENST00000537004 A0A087WUU8 490 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 GXYLT2A0PJZ3 443 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 CLCA1A8K7I4 914 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 AP3D1O14617 1153 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 KIAA0513O60268 411 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 MAN1A2O60476 641 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 MPZL2O60487 215 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 NKX2-2O95096 273 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 TP53P04637 393 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-208ENST00000537004 DBIP07108 87 aaKnown RBP10.94□□□□□ -0.66
CLIP1-208ENST00000537004 IFNA8P32881 189 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 NUDT6P53370 316 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 ALDH6A1Q02252 535 aaKnown RBP10.94□□□□□ -0.66
CLIP1-208ENST00000537004 MVKQ03426 396 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 ST3GAL3Q11203 375 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 COX10Q12887 443 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 MFAP5Q13361 173 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 MAPK14Q16539 360 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 ENTPD8Q5MY95 495 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 SLX4IPQ5VYV7 408 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 PLAG1Q6DJT9 500 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 FIGNL1Q6PIW4 674 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 PTCHD4Q6ZW05 846 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 PLEKHM3Q6ZWE6 761 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 MCHR1Q99705 422 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 DCUN1D5Q9BTE7 237 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 ASF1BQ9NVP2 202 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 FKBP14Q9NWM8 211 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 C19orf25Q9UFG5 118 aaPredicted RBP10.94□□□□□ -0.66
CLIP1-208ENST00000537004 KCNE5Q9UJ90 142 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 CLDN16Q9Y5I7 305 aa10.94□□□□□ -0.66
CLIP1-208ENST00000537004 IGKV3D-11A0A0A0MRZ8 115 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 NPIPA5A0A0B4J1W7 369 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 NPIPA7E9PJI5 369 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 HRKO00198 91 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 PFDN1O60925 122 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 WDPCPO95876 746 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 NPIPA8P0DM63 369 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 NID1P14543 1247 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 EMDP50402 254 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 HSD17B7P56937 341 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 ARG2P78540 354 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 ZNF730Q6ZMV8 503 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 QSOX2Q6ZRP7 698 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 RAB2BQ8WUD1 216 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 GGHQ92820 318 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 MYDGFQ969H8 173 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 DGAT2Q96PD7 388 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 LPAR4Q99677 370 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 LMF2Q9BU23 707 aaKnown RBP10.93□□□□□ -0.66
CLIP1-208ENST00000537004 FUNDC2Q9BWH2 189 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 ANKRD19PQ9H560 264 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 FOLH1BQ9HBA9 442 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 ACOT13Q9NPJ3 140 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 ANKRD10Q9NXR5 420 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 USP9YO00507 2555 aaPredicted RBP10.93□□□□□ -0.66
CLIP1-208ENST00000537004 SVILO95425 2214 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 SHANK1Q9Y566 2161 aa10.93□□□□□ -0.66
CLIP1-208ENST00000537004 TRIM64BA6NI03 449 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SOX30O94993 753 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 KCNK2O95069 426 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 ICAM2P13598 275 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 TNNI3P19429 210 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 GSTM3P21266 225 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 GNLYP22749 145 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SSTR4P31391 388 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 ZNF136P52737 540 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 PSG6Q00889 435 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 MRPL49Q13405 166 aaKnown RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 ZNHIT3Q15649 155 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 MRPL2Q5T653 305 aaKnown RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 C12orf73Q69YU5 71 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 CASP12Q6UXS9 341 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 PMM1Q92871 262 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 LMF1Q96S06 567 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 GPA33Q99795 319 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 POLE3Q9NRF9 147 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 STMN3Q9NZ72 180 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 A0A1W2PPW3 197 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 TCRBV16S1A1N1A0A5B0 115 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SH3D21A4FU49 640 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 CDHR4A6H8M9 788 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 OR5F1O95221 314 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 NTN1O95631 604 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 THY1P04216 161 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 CDK1P06493 297 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 CYC1P08574 325 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 CCNA2P20248 432 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 ACVR2AP27037 513 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 C21orf33P30042 268 aaPredicted RBP10.92□□□□□ -0.66
CLIP1-208ENST00000537004 IFNGR2P38484 337 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 STT3AP46977 705 aa10.92□□□□□ -0.66
CLIP1-208ENST00000537004 SLC26A5P58743 744 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms