RNA–Protein interactions for RNA: ENST00000536011.5

RTN3-207, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 992 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-207ENST00000536011 ANKRD46Q86W74 232 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 ZNF100Q8IYN0 542 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 ZNF619Q8N2I2 560 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 IGFBPL1Q8WX77 278 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 ROPN1LQ96C74 230 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 MUCL1Q96DR8 90 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 TRMT61AQ96FX7 289 aaKnown RBP11.65□□□□□ -0.54
RTN3-207ENST00000536011 NUF2Q9BZD4 464 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 KCNK9Q9NPC2 374 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 EXOSC3Q9NQT5 275 aaKnown RBP11.65□□□□□ -0.54
RTN3-207ENST00000536011 MARCOQ9UEW3 520 aaPredicted RBP11.65□□□□□ -0.54
RTN3-207ENST00000536011 HAO1Q9UJM8 370 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 LIPT1Q9Y234 373 aa11.65□□□□□ -0.54
RTN3-207ENST00000536011 GPR171O14626 319 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 SMAD7O15105 426 aaKnown RBP11.64□□□□□ -0.55
RTN3-207ENST00000536011 SMAD9O15198 467 aaKnown RBP11.64□□□□□ -0.55
RTN3-207ENST00000536011 H6PDO95479 791 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 LY6G6DO95868 133 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 DHRS4L1P0CG22 281 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 TFPIP10646 304 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 UQCRBP14927 111 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 HTR3AP46098 478 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 CLK1P49759 484 aaKnown RBP11.64□□□□□ -0.55
RTN3-207ENST00000536011 PPP2R2BQ00005 443 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 CASP8Q14790 479 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 PDK3Q15120 406 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 FAM174BQ3ZCQ3 159 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 GPAT3Q53EU6 434 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 SPANXN4Q5MJ08 99 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 NCMAPQ5T1S8 102 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 AP1ARQ63HQ0 302 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 TYW3Q6IPR3 259 aaKnown RBP11.64□□□□□ -0.55
RTN3-207ENST00000536011 OGFOD2Q6N063 350 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 TMPPEQ6ZT21 453 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 GRINAQ7Z429 371 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 P2RY8Q86VZ1 359 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 CMIPQ8IY22 773 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 CLEC4FQ8N1N0 589 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 ARFGAP2Q8N6H7 521 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 FAM71CQ8NEG0 241 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 PIGXQ8TBF5 258 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 CCDC115Q96NT0 180 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 ZBTB18Q99592 522 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 SLC35A5Q9BS91 424 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 SAP130Q9H0E3 1048 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 QRSL1Q9H0R6 528 aaKnown RBP11.64□□□□□ -0.55
RTN3-207ENST00000536011 MEAF6Q9HAF1 191 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.64□□□□□ -0.55
RTN3-207ENST00000536011 FAIMQ9NVQ4 179 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 CHRNA9Q9UGM1 479 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 BTNL2Q9UIR0 455 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 KCNE5Q9UJ90 142 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 LAMP3Q9UQV4 416 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 HDGFL3Q9Y3E1 203 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 ZANQ9Y493 2812 aa11.64□□□□□ -0.55
RTN3-207ENST00000536011 TLN2Q9Y4G6 2542 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 HIVEP2P31629 2446 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 IGKV3D-15A0A087WSY6 115 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 TRIM64A6NGJ6 449 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 TRIM64BA6NI03 449 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 SCN2BO60939 215 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 PMS2P2O95744 297 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 PLAUP00749 431 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 GGT1P19440 569 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 COX5AP20674 150 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 BGNP21810 368 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 PGM1P36871 562 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 PPA1Q15181 289 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 TSC22D1Q15714 1073 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 STK11Q15831 433 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 TIMM23BQ5SRD1 257 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 CEP85LQ5SZL2 805 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 HHATQ5VTY9 493 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 ABLIM2Q6H8Q1 611 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 SPATA19Q7Z5L4 167 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 MTDHQ86UE4 582 aaKnown RBP11.63□□□□□ -0.55
RTN3-207ENST00000536011 RAB3IL1Q8TBN0 382 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 PIWIL2Q8TC59 973 aaKnown RBP11.63□□□□□ -0.55
RTN3-207ENST00000536011 PMM1Q92871 262 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 RAB8BQ92930 207 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 GTPBP3Q969Y2 492 aaKnown RBP11.63□□□□□ -0.55
RTN3-207ENST00000536011 RADILQ96JH8 1075 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 TRNT1Q96Q11 434 aaKnown RBP11.63□□□□□ -0.55
RTN3-207ENST00000536011 PANX1Q96RD7 426 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 SORT1Q99523 831 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 PAIP2Q9BPZ3 127 aaKnown RBP11.63□□□□□ -0.55
RTN3-207ENST00000536011 CCDC106Q9BWC9 280 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.63□□□□□ -0.55
RTN3-207ENST00000536011 V9GYY5 206 aaPredicted RBP11.63□□□□□ -0.55
RTN3-207ENST00000536011 HEATR5AQ86XA9 2040 aa11.63□□□□□ -0.55
RTN3-207ENST00000536011 CENPVL1A0A0U1RR11 272 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 A0A1W2PP18 115 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 TRPC5OSA6NMA1 111 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 ZNF814B7Z6K7 855 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 LYZL6O75951 148 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 RYKP34925 604 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 MAGEA8P43361 318 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 MAP2K6P52564 334 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 CASP9P55211 416 aa11.62□□□□□ -0.55
RTN3-207ENST00000536011 KCNJ10P78508 379 aa11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms