RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 PRAMEF20Q5VT98 475 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 RTL4Q6ZR62 310 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 DEPDC4Q8N2C3 294 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 THAP4Q8WY91 577 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 ANGPTL4Q9BY76 406 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 DSN1Q9H410 356 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 MYRFQ9Y2G1 1151 aa19.14■□□□□ 0.65
VPS28-208ENST00000527797 HTR3EA5X5Y0 456 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 EIF4E1BA6NMX2 242 aaKnown RBP19.13■□□□□ 0.65
VPS28-208ENST00000527797 CCL3P10147 92 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 CXCR1P25024 350 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 RRADP55042 308 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 CDC42P60953 191 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 ATP1A1-AS1Q5TC04 95 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 ZNF468Q5VIY5 522 aaPredicted RBP19.13■□□□□ 0.65
VPS28-208ENST00000527797 TMEM236Q5W0B7 351 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 KIF18BQ86Y91 864 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 CCDC71Q8IV32 467 aaPredicted RBP19.13■□□□□ 0.65
VPS28-208ENST00000527797 P3H2Q8IVL5 708 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 BEST3Q8N1M1 668 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 FAM81AQ8TBF8 368 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 TEX47Q8TBZ9 253 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 TMEM43Q9BTV4 400 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 YTHDF1Q9BYJ9 559 aaKnown RBP19.13■□□□□ 0.65
VPS28-208ENST00000527797 ABI3Q9P2A4 366 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 OSGIN1Q9UJX0 560 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 PCDHGB6Q9Y5F9 930 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 AHCTF1Q8WYP5 2266 aa19.13■□□□□ 0.65
VPS28-208ENST00000527797 EFCAB9A8MZ26 197 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 CDC42EP2O14613 210 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 SAGP10523 405 aaPredicted RBP19.12■□□□□ 0.65
VPS28-208ENST00000527797 HTR3AP46098 478 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 HLCSP50747 726 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 POLR2HP52434 150 aaKnown RBP19.12■□□□□ 0.65
VPS28-208ENST00000527797 CTU2Q2VPK5 515 aaKnown RBP19.12■□□□□ 0.65
VPS28-208ENST00000527797 ABHD17BQ5VST6 288 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 SLX4IPQ5VYV7 408 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 GRINAQ7Z429 371 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 CYP4Z2PQ8N1L4 340 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 FBLIM1Q8WUP2 373 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 ST8SIA1Q92185 356 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 SGTBQ96EQ0 304 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 FRMD6Q96NE9 622 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 EGLN3Q9H6Z9 239 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 ZNF696Q9H7X3 374 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 KLK13Q9UKR3 277 aa19.12■□□□□ 0.65
VPS28-208ENST00000527797 ANKRD33BA6NCL7 494 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ENO4A6NNW6 628 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ELK4P28324 431 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 GIPRP48546 466 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 CYB561P49447 251 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 SRSF6Q13247 344 aaKnown RBP19.11■□□□□ 0.65
VPS28-208ENST00000527797 CLN3Q13286 438 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 CDK5R2Q13319 367 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 LSRQ86X29 649 aaPredicted RBP19.11■□□□□ 0.65
VPS28-208ENST00000527797 CLDN22Q8N7P3 220 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 OSTF1Q92882 214 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 IMPAD1Q9NX62 359 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ANKRD10Q9NXR5 420 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 IL20Q9NYY1 176 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 SCOCQ9UIL1 159 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 CDH10Q9Y6N8 788 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 EXPH5Q8NEV8 1989 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 CNOT1A5YKK6 2376 aaKnown RBP19.11■□□□□ 0.65
VPS28-208ENST00000527797 IGKV1D-42A0A075B6H8 117 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ARGFXA6NJG6 315 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 NKX2-8O15522 239 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 P04436 131 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ZNF41P51814 821 aaPredicted RBP19.11■□□□□ 0.65
VPS28-208ENST00000527797 GINS1Q14691 196 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 MAD2L1BPQ15013 274 aaPredicted RBP19.11■□□□□ 0.65
VPS28-208ENST00000527797 C6orf141Q5SZD1 244 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 BROXQ5VW32 411 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ZNF620Q6ZNG0 422 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 ENTHD1Q8IYW4 607 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 OR2M3Q8NG83 312 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 OR4K17Q8NGC6 315 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 HDAC2Q92769 488 aaKnown RBP19.11■□□□□ 0.65
VPS28-208ENST00000527797 PLA2G12AQ9BZM1 189 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 PTGES2Q9H7Z7 377 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 RNF6Q9Y252 685 aa19.11■□□□□ 0.65
VPS28-208ENST00000527797 PTPRZ1P23471 2315 aaPredicted RBP19.1■□□□□ 0.65
VPS28-208ENST00000527797 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 TMED7-TICAM2A0A0A6YYA0 188 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 B4DXG7 233 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 SNX4O95219 450 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 IGF2P01344 180 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 PRKCAP17252 672 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 CCNA2P20248 432 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 CASRP41180 1078 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 SMSP52788 366 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 CDK5Q00535 292 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 OC90Q02509 493 aaPredicted RBP19.1■□□□□ 0.65
VPS28-208ENST00000527797 C12orf73Q69YU5 71 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 RPL13AP3Q6NVV1 102 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 POMZP3Q6PJE2 187 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 CASP12Q6UXS9 341 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 GALNT16Q8N428 558 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 WDSUB1Q8N9V3 476 aa19.1■□□□□ 0.65
VPS28-208ENST00000527797 CNIH3Q8TBE1 160 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms