RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 SEMA4FO95754 770 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 CLUP10909 449 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 NPR2P20594 1047 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 THBS2P35442 1172 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 CD83Q01151 205 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 TMEM31Q5JXX7 168 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 DMKNQ6E0U4 476 aaPredicted RBP19.57■□□□□ 0.72
VPS28-205ENST00000526204 PAMR1Q6UXH9 720 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 LINC00114Q6XXX2 140 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 UTS2BQ765I0 119 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 OR4M2Q8NGB6 313 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 OR9A4Q8NGU2 314 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 HDHD2Q9H0R4 259 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 RASD1Q9Y272 281 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 HRO43593 1189 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 SERPINA3P01011 423 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 PITPNBP48739 271 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 EMDP50402 254 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 OR12D2P58182 307 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 TFF2Q03403 129 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 ZNF141Q15928 474 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 FAAH2Q6GMR7 532 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 SLC22A18ASQ8N1D0 253 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 RBM18Q96H35 190 aaKnown RBP19.57■□□□□ 0.72
VPS28-205ENST00000526204 PGLYRP3Q96LB9 341 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.57■□□□□ 0.72
VPS28-205ENST00000526204 PAQR5Q9NXK6 330 aaPredicted RBP19.57■□□□□ 0.72
VPS28-205ENST00000526204 ALG5Q9Y673 324 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 CLCA3PQ9Y6N3 262 aa19.57■□□□□ 0.72
VPS28-205ENST00000526204 TCRBV21S2A2A0A5A6 115 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 NGFRP08138 427 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 ATP12AP54707 1039 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 PSMD4P55036 377 aaKnown RBP19.56■□□□□ 0.72
VPS28-205ENST00000526204 SKP1P63208 163 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 CRYZQ08257 329 aaKnown RBP19.56■□□□□ 0.72
VPS28-205ENST00000526204 FHL1Q13642 323 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 ACSM3Q53FZ2 586 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 ZC3H14Q6PJT7 736 aaKnown RBP19.56■□□□□ 0.72
VPS28-205ENST00000526204 TAF8Q7Z7C8 310 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 SAMD12Q8N8I0 201 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 POMGNT2Q8NAT1 580 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 C17orf47Q8NEP4 570 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 RPLP0P6Q8NHW5 317 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 RIT1Q92963 219 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 CREB3L1Q96BA8 519 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 UPRTQ96BW1 309 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 ERMAPQ96PL5 475 aaPredicted RBP19.56■□□□□ 0.72
VPS28-205ENST00000526204 G6PC3Q9BUM1 346 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 WDR70Q9NW82 654 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 RPS6KB2Q9UBS0 482 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 NPFFR2Q9Y5X5 522 aa19.56■□□□□ 0.72
VPS28-205ENST00000526204 NDUFB2O95178 105 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 PYCR1P32322 319 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 HACD4Q5VWC8 232 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 LIX1LQ8IVB5 337 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 CMIPQ8IY22 773 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ARHGEF39Q8N4T4 335 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 RFT1Q96AA3 541 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 VSTM2LQ96N03 204 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 TMEM246Q9BRR3 403 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 WACQ9BTA9 647 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 TCEAL2Q9H3H9 227 aaPredicted RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 SLA2Q9H6Q3 261 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 C8orf33Q9H7E9 229 aaPredicted RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 SLC28A3Q9HAS3 691 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 MKKSQ9NPJ1 570 aaPredicted RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 MSRAQ9UJ68 235 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 FBXL4Q9UKA2 621 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 POMT2Q9UKY4 750 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 MRPS33Q9Y291 106 aaKnown RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 F5P12259 2224 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 BLACEA4D250 179 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 CENPBD1B2RD01 187 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ADAM11O75078 769 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 IGKV1D-16P01601 117 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 EIF4EP06730 217 aaKnown RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 OR2T7P0C7T2 308 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 RNH1P13489 461 aaKnown RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 GABRG2P18507 467 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ERP29P30040 261 aaKnown RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 GPR143P51810 404 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ACTA2P62736 377 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ACTG2P63267 376 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 FGFBP1Q14512 234 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 FAM27D1Q5T7N8 215 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 OR4M1Q8NGD0 313 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 OR52E2Q8NGJ4 325 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 OR2T27Q8NH04 317 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 GHSRQ92847 366 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ARSGQ96EG1 525 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 THAP7Q9BT49 309 aaPredicted RBP19.55■□□□□ 0.72
VPS28-205ENST00000526204 FAM60AQ9NP50 221 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 CHRNA9Q9UGM1 479 aa19.55■□□□□ 0.72
VPS28-205ENST00000526204 ST6GAL1P15907 406 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 ACVR1BP36896 505 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 PPP1CAP62136 330 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 HHEXQ03014 270 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 STX4Q12846 297 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 BICRALQ6AI39 1079 aa19.54■□□□□ 0.72
VPS28-205ENST00000526204 GLCCI1Q86VQ1 547 aa19.54■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms