RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 KLF4O43474 513 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 CYTIPO60759 359 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 ANP32DO95626 131 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 GSNP06396 782 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 NID1P14543 1247 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 UQCRBP14927 111 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 ADSLP30566 484 aaPredicted RBP12.15□□□□□ -0.46
TCOF1-215ENST00000515516 HTR3AP46098 478 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 IDH2P48735 452 aaKnown RBP12.15□□□□□ -0.46
TCOF1-215ENST00000515516 DIO1P49895 249 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 GSTA3Q16772 222 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 PDCD4Q53EL6 469 aaKnown RBP12.15□□□□□ -0.46
TCOF1-215ENST00000515516 Q5PR19 223 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 LRRC74BQ6ZQY2 392 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 CMIPQ8IY22 773 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 ZNF100Q8IYN0 542 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 GABRG1Q8N1C3 465 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 PMM1Q92871 262 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 ZNF524Q96C55 264 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 C18orf12Q96KH6 178 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 PSD2Q9BQI7 771 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 INPP5KQ9BT40 448 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 RMND5AQ9H871 391 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 CACYBPQ9HB71 228 aaKnown RBP12.15□□□□□ -0.46
TCOF1-215ENST00000515516 CTPS2Q9NRF8 586 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 EMC3Q9P0I2 261 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 CHRNA9Q9UGM1 479 aa12.15□□□□□ -0.46
TCOF1-215ENST00000515516 PRRC2AP48634 2157 aaKnown RBP12.15□□□□□ -0.47
TCOF1-215ENST00000515516 MED12LQ86YW9 2145 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF724A8MTY0 619 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 SMAD9O15198 467 aaKnown RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 GCM2O75603 506 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 FESP07332 822 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 IL7RP16871 459 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 LOXP28300 417 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 IL12AP29459 219 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 MAGEA8P43361 318 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 OR3A2P47893 321 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 CLK1P49759 484 aaKnown RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 FUT5Q11128 374 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 ITGADQ13349 1161 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 SYPL1Q16563 259 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 AP1ARQ63HQ0 302 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 BHLHA15Q7RTS1 189 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 GALNT5Q7Z7M9 940 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 HMGN2P46Q86SG4 172 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 BIVMQ86UB2 503 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 MTDHQ86UE4 582 aaKnown RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 PEX5LQ8IYB4 626 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 ANKFN1Q8N957 763 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 FAM71CQ8NEG0 241 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 PNPT1Q8TCS8 783 aaKnown RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 TMEM171Q8WVE6 324 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 WDR60Q8WVS4 1066 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF775Q96BV0 537 aaPredicted RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 ZG16BQ96DA0 208 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 PERPQ96FX8 193 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 CCDC106Q9BWC9 280 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 CXorf56Q9H5V9 222 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 ESRP2Q9H6T0 727 aaKnown RBP12.14□□□□□ -0.47
TCOF1-215ENST00000515516 TMBIM4Q9HC24 238 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 DLL4Q9NR61 685 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 HDGFL3Q9Y3E1 203 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 MPDZO75970 2070 aa12.14□□□□□ -0.47
TCOF1-215ENST00000515516 AKAP6Q13023 2319 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 TMEM247A6NEH6 219 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 AGAP5A6NIR3 686 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 UBDO15205 165 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 DBIP07108 87 aaKnown RBP12.13□□□□□ -0.47
TCOF1-215ENST00000515516 CD3EP07766 207 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 CCNA2P20248 432 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 CDKN2CP42773 168 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 CRATP43155 626 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 OR2B6P58173 313 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 TSC22D1Q15714 1073 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 PRSS57Q6UWY2 283 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 Q6ZT83 130 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 YTHDF3Q7Z739 585 aaKnown RBP12.13□□□□□ -0.47
TCOF1-215ENST00000515516 UBE2J2Q8N2K1 259 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 MIER2Q8N344 545 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 PIGXQ8TBF5 258 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 PIWIL2Q8TC59 973 aaKnown RBP12.13□□□□□ -0.47
TCOF1-215ENST00000515516 CNOT9Q92600 299 aaKnown RBP12.13□□□□□ -0.47
TCOF1-215ENST00000515516 TLCD1Q96CP7 247 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 DDIT4LQ96D03 193 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 MUCL1Q96DR8 90 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 ITCHQ96J02 903 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 ZNF300Q96RE9 604 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-215ENST00000515516 POTEKPQ9BYX7 375 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 SLC38A1Q9H2H9 487 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 GSX1Q9H4S2 264 aaPredicted RBP12.13□□□□□ -0.47
TCOF1-215ENST00000515516 CALML5Q9NZT1 146 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 ZIM2Q9NZV7 527 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 P2RX2Q9UBL9 471 aa12.13□□□□□ -0.47
TCOF1-215ENST00000515516 ITPR3Q14573 2671 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 TMED7-TICAM2A0A0A6YYA0 188 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 PRAMEF27A3QJZ7 478 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 CFAP73A6NFT4 308 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 CLDN24A6NM45 220 aa12.12□□□□□ -0.47
TCOF1-215ENST00000515516 FAM171A2A8MVW0 826 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms