RNA–Protein interactions for RNA: ENST00000513562.1

DDX41-216, Transcript of DEAD-box helicase 41, humanhuman

TSL 4

Gene DDX41, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-216ENST00000513562 NPIPB9F8W1W9 429 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 GTPBP1O00178 669 aaKnown RBP9.52□□□□□ -0.89
DDX41-216ENST00000513562 SULT2B1O00204 365 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 GPR171O14626 319 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 DNAJA2O60884 412 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 OR4A8P0C604 315 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 ATP6V1C1P21283 382 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 FRKP42685 505 aaPredicted RBP9.52□□□□□ -0.89
DDX41-216ENST00000513562 PAFAH1B1P43034 410 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 PKNOX1P55347 436 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 PRPS1P60891 318 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 RIN1Q13671 783 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 CBFBQ13951 182 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 TRIP10Q15642 601 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 ADIPOQQ15848 244 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 ZNF385BQ569K4 471 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 SYT14P1Q58G82 188 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 C9orf135Q5VTT2 229 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 ANKRD26P1Q6NSI1 321 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 NOXRED1Q6NXP6 359 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 GLCCI1Q86VQ1 547 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 PIGXQ8TBF5 258 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 JADE3Q92613 823 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 CDS1Q92903 461 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 EGLN2Q96KS0 407 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 QRSL1Q9H0R6 528 aaKnown RBP9.52□□□□□ -0.89
DDX41-216ENST00000513562 RAB1BQ9H0U4 201 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 ACSS3Q9H6R3 686 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 FBXO9Q9UK97 447 aaPredicted RBP9.52□□□□□ -0.89
DDX41-216ENST00000513562 PCDHB10Q9UN67 800 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 PCDHB14Q9Y5E9 798 aa9.52□□□□□ -0.89
DDX41-216ENST00000513562 IGHV1-18A0A0C4DH31 117 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ZNF264O43296 627 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ZSCAN12O43309 604 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 EIF4E2O60573 245 aaKnown RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 TBX19O60806 448 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 RGS9O75916 674 aaPredicted RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 RSL1D1O76021 490 aaKnown RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 WNT11O96014 354 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 LIMS1P48059 325 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 KHKP50053 298 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ATP12AP54707 1039 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 FOXA1P55317 472 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 TGFBR3Q03167 851 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 CCNIQ14094 377 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 IMPG1Q17R60 797 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 CDC73Q6P1J9 531 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 CASP12Q6UXS9 341 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 TRIM46Q7Z4K8 759 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ZNF786Q8N393 782 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 TMCO5AQ8N6Q1 288 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 RFWD2Q8NHY2 731 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 SLC25A43Q8WUT9 341 aaPredicted RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 NEU4Q8WWR8 484 aaPredicted RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 ST8SIA1Q92185 356 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ZHX1-C8orf76Q96EF9 292 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 BOD1Q96IK1 185 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ZNF747Q9BV97 191 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 KATNB1Q9BVA0 655 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 PIGUQ9H490 435 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 SERINC1Q9NRX5 453 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 SLC7A10Q9NS82 523 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 ACSS1Q9NUB1 689 aaPredicted RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 DTNAQ9Y4J8 743 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 PRKDCP78527 4128 aaKnown RBP9.51□□□□□ -0.89
DDX41-216ENST00000513562 DYSFO75923 2080 aa9.51□□□□□ -0.89
DDX41-216ENST00000513562 DNPH1O43598 174 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 PMS2P2O95744 297 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 HMGN2P05204 90 aaKnown RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 ERCC1P07992 297 aaPredicted RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 INHBAP08476 426 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 UBL4AP11441 157 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 IFNGR1P15260 489 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 TAC1P20366 129 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 IMPDH1P20839 514 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 MPGP29372 298 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 CCR4P51679 360 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 SESN3P58005 492 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 SKP2Q13309 424 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 LASP1Q14847 261 aaKnown RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 KIAA0040Q15053 153 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 PDCD2Q16342 344 aaPredicted RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 TEX35Q5T0J7 233 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 DCST2Q5T1A1 773 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 TSPO2Q5TGU0 170 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 SHQ1Q6PI26 577 aaKnown RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 KLHL24Q6TFL4 600 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 SHISA2Q6UWI4 295 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 SVOPLQ8N434 492 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 WDR60Q8WVS4 1066 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 TMEM186Q96B77 213 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 PPCDCQ96CD2 204 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 FAM120BQ96EK7 910 aaKnown RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 L3HYPDHQ96EM0 354 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 CHMP6Q96FZ7 201 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 METTL2AQ96IZ6 378 aaKnown RBP9.5□□□□□ -0.89
DDX41-216ENST00000513562 SLC38A2Q96QD8 506 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 JMJD8Q96S16 334 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 OBP2BQ9NPH6 170 aa9.5□□□□□ -0.89
DDX41-216ENST00000513562 ZCCHC3Q9NUD5 404 aaKnown RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms