RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 HTR3AP46098 478 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 YAP1P46937 504 aaKnown RBP13.52□□□□□ -0.25
NUP54-213ENST00000513352 GFRA1P56159 465 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 TAS2R41P59536 307 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 KCNC4Q03721 635 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 IGFBP7Q16270 282 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 SLC25A53Q5H9E4 307 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 ENTPD8Q5MY95 495 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 DCST1Q5T197 706 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 WLSQ5T9L3 541 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 YTHDF3Q7Z739 585 aaKnown RBP13.52□□□□□ -0.25
NUP54-213ENST00000513352 ST6GALNAC3Q8NDV1 305 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 RSRC1Q96IZ7 334 aaKnown RBP13.52□□□□□ -0.25
NUP54-213ENST00000513352 ALKBH4Q9NXW9 302 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 SH3BGRL2Q9UJC5 107 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 TMED7Q9Y3B3 224 aa13.52□□□□□ -0.25
NUP54-213ENST00000513352 RP1L1Q8IWN7 2480 aaPredicted RBP13.52□□□□□ -0.25
NUP54-213ENST00000513352 MPDZO75970 2070 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 BSNQ9UPA5 3926 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 ELOA3DA6NLF2 546 aaPredicted RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 H0Y3Z8 333 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 LINC01387J3KSC0 135 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 hCG_2039718K7EN88 272 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 BCKDKO14874 412 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 FMO6PO60774 539 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 WISP1O95388 367 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 IL11P20809 199 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 ADH6P28332 368 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 IFNA8P32881 189 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 APOBEC1P41238 236 aaKnown RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 CRYZQ08257 329 aaKnown RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 SELENBP1Q13228 472 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 MRPL49Q13405 166 aaKnown RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 TMEM44Q2T9K0 475 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 ELOA3BQ3SY89 546 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 ALG10BQ5I7T1 473 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 VASNQ6EMK4 673 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 C3orf33Q6P1S2 294 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 CD163Q86VB7 1156 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 CYP4Z1Q86W10 505 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 ATCAYQ86WG3 371 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 LSRQ86X29 649 aaPredicted RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 LILRA2Q8N149 483 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 MEIOBQ8N635 442 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 ELOA3Q8NG57 546 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 MIB2Q96AX9 1013 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 C3orf49Q96BT1 292 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 RAB3IPQ96QF0 476 aaPredicted RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 TIMP4Q99727 224 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 AMBRA1Q9C0C7 1298 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 CHRNA9Q9UGM1 479 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 OSGIN1Q9UJX0 560 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 FAM32AQ9Y421 112 aaKnown RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 SPIN1Q9Y657 262 aaPredicted RBP13.51□□□□□ -0.25
NUP54-213ENST00000513352 AP4B1Q9Y6B7 739 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 NBASA2RRP1 2371 aa13.51□□□□□ -0.25
NUP54-213ENST00000513352 TCRBV5S2A0A599 114 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 TRAPPC13A5PLN9 417 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 OR14I1A6ND48 311 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 EIF1AYO14602 144 aaKnown RBP13.5□□□□□ -0.25
NUP54-213ENST00000513352 PRRG2O14669 202 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 TPST2O60704 377 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 SLC19A2O60779 497 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 NTN1O95631 604 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 PTNP21246 168 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 SLC7A1P30825 629 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 LHX2P50458 406 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 CASP6P55212 293 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 TMEM176BQ3YBM2 270 aaPredicted RBP13.5□□□□□ -0.25
NUP54-213ENST00000513352 FAM98BQ52LJ0 330 aaKnown RBP13.5□□□□□ -0.25
NUP54-213ENST00000513352 PPP4R4Q6NUP7 873 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 ZNF585AQ6P3V2 769 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 CHMP1BQ7LBR1 199 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 FGD2Q7Z6J4 655 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 LSMEM1Q8N8F7 131 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 ADAMTS16Q8TE57 1224 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 DNAJA4Q8WW22 397 aaPredicted RBP13.5□□□□□ -0.25
NUP54-213ENST00000513352 DNAJA3Q96EY1 480 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 SLC41A3Q96GZ6 507 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 PNPLA3Q9NST1 481 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 SLC7A7Q9UM01 511 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 AURKCQ9UQB9 309 aa13.5□□□□□ -0.25
NUP54-213ENST00000513352 TMEM72A0PK05 275 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 AQP12BA6NM10 295 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 GJE1A6NN92 205 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 J3KTA2 159 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 ETV2O00321 342 aaPredicted RBP13.49□□□□□ -0.25
NUP54-213ENST00000513352 MT-ND1P03886 318 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 FABP3P05413 133 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 PSMA4P25789 261 aaKnown RBP13.49□□□□□ -0.25
NUP54-213ENST00000513352 CDH12P55289 794 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 CLDN20P56880 219 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 RAC1P63000 192 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 CHRNB3Q05901 458 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 NHSL2Q5HYW2 709 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 ZNF613Q6PF04 617 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 ULK3Q6PHR2 472 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 ZNF605Q86T29 641 aa13.49□□□□□ -0.25
NUP54-213ENST00000513352 ATG4DQ86TL0 474 aaPredicted RBP13.49□□□□□ -0.25
NUP54-213ENST00000513352 ADGRG3Q86Y34 549 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms