RNA–Protein interactions for RNA: ENST00000508319.1

HMGCS1-205, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

TSL 3

Gene HMGCS1, Length 591 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-205ENST00000508319 ZNF75CPQ92670 426 aaPredicted RBP11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 KISS1RQ969F8 398 aaPredicted RBP11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 ROPN1LQ96C74 230 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 NEURL3Q96EH8 262 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 TEX37Q96LM6 180 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 ZNF300Q96RE9 604 aaPredicted RBP11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 BDH2Q9BUT1 245 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 CCDC106Q9BWC9 280 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 PARD6BQ9BYG5 372 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 SAP130Q9H0E3 1048 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 CXorf56Q9H5V9 222 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 POLE3Q9NRF9 147 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 ACER3Q9NUN7 267 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 PRSS50Q9UI38 385 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 PCDHGB4Q9UN71 923 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 WDR45Q9Y484 360 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 RNF115Q9Y4L5 304 aa11.53□□□□□ -0.56
HMGCS1-205ENST00000508319 ADAM11O75078 769 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 CNOT4O95628 575 aaKnown RBP11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 CPSF4O95639 269 aaKnown RBP11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 AGR2O95994 175 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 FESP07332 822 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ALDOCP09972 364 aaKnown RBP11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 LBPP18428 481 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 COX5AP20674 150 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 KHKP50053 298 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 RASGEF1BQ0VAM2 473 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 BST1Q10588 318 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ITGADQ13349 1161 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 FAM174BQ3ZCQ3 159 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 CEP85LQ5SZL2 805 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ATAD3BQ5T9A4 648 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 TMPPEQ6ZT21 453 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 BHLHA15Q7RTS1 189 aaPredicted RBP11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ZC3HAV1Q7Z2W4 902 aaKnown RBP11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 KIRREL3Q8IZU9 778 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 XAGE5Q8WWM1 108 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 TMEM234Q8WY98 164 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 HSD17B8Q92506 261 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ARL8AQ96BM9 186 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ZG16BQ96DA0 208 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 CCDC115Q96NT0 180 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 SLC35A5Q9BS91 424 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 CTPS2Q9NRF8 586 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 PNPOQ9NVS9 261 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 LAMP3Q9UQV4 416 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 SLC35A3Q9Y2D2 325 aa11.52□□□□□ -0.57
HMGCS1-205ENST00000508319 ANK3Q12955 4377 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 IGKV3D-15A0A087WSY6 115 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CLDN24A6NM45 220 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ZNF724A8MTY0 619 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 C9JVG2 144 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 SULT2B1O00204 365 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 HMGN4O00479 90 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 SDHDO14521 159 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 SMAD7O15105 426 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CLOCKO15516 846 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 LYZL6O75951 148 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CHI3L1P36222 383 aaPredicted RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 APOBEC1P41238 236 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ATP5J2P56134 94 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CSNK2A1P68400 391 aaPredicted RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 BSPH1Q075Z2 132 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 STX3Q13277 289 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CAPRIN1Q14444 709 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 HMGN2P46Q86SG4 172 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 LSRQ86X29 649 aaPredicted RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 RNF130Q86XS8 419 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 VPS37AQ8NEZ2 397 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 PIWIL2Q8TC59 973 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 NEUROG1Q92886 237 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 FBXW5Q969U6 566 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ZNF775Q96BV0 537 aaPredicted RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ZBTB9Q96C00 473 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ARL5BQ96KC2 179 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CENPHQ9H3R5 247 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ESRP2Q9H6T0 727 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 NGBQ9NPG2 151 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 EXOSC3Q9NQT5 275 aaKnown RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 SERINC1Q9NRX5 453 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 AIG1Q9NVV5 245 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 MARCOQ9UEW3 520 aaPredicted RBP11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 CHRNA9Q9UGM1 479 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 BTNL2Q9UIR0 455 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 RAB21Q9UL25 225 aa11.51□□□□□ -0.57
HMGCS1-205ENST00000508319 ZNF716A6NP11 495 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 OVOL3O00110 214 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 CD3EP07766 207 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 CHRM4P08173 479 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 SOD3P08294 240 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 DANCRP0C864 163 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 IGHV1-2P23083 117 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 IL12AP29459 219 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 S100A3P33764 101 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 RYKP34925 604 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 CDKN2CP42773 168 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 NME5P56597 212 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 UFM1P61960 85 aa11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 RPS4XP62701 263 aaKnown RBP11.5□□□□□ -0.57
HMGCS1-205ENST00000508319 KCNJ10P78508 379 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 54.1 ms