RNA–Protein interactions for RNA: ENST00000496043.5

PTPRF-214, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 415 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-214ENST00000496043 LRRC74BQ6ZQY2 392 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 MTDHQ86UE4 582 aaKnown RBP11.33□□□□□ -0.6
PTPRF-214ENST00000496043 GABRG1Q8N1C3 465 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 ARFGAP2Q8N6H7 521 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 SLC25A43Q8WUT9 341 aaPredicted RBP11.33□□□□□ -0.6
PTPRF-214ENST00000496043 HSD17B8Q92506 261 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 S100PBPQ96BU1 408 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 PLPPR2Q96GM1 343 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 CCL19Q99731 98 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 INPP5KQ9BT40 448 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 BCO1Q9HAY6 547 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 NGBQ9NPG2 151 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 EXOSC3Q9NQT5 275 aaKnown RBP11.33□□□□□ -0.6
PTPRF-214ENST00000496043 CTPS2Q9NRF8 586 aa11.33□□□□□ -0.6
PTPRF-214ENST00000496043 C2CD3Q4AC94 2353 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 PRAMEF27A3QJZ7 478 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF724A8MTY0 619 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF814B7Z6K7 855 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 C9JVG2 144 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 GSNP06396 782 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 NR2F1P10589 423 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 IDO1P14902 403 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 OR3A2P47893 321 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 IDH2P48735 452 aaKnown RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 DIO1P49895 249 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 FUT5Q11128 374 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ITGADQ13349 1161 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 GNA13Q14344 377 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 SYPL1Q16563 259 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 PDCD4Q53EL6 469 aaKnown RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 SYT14P1Q58G82 188 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 PRSS57Q6UWY2 283 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF704Q6ZNC4 412 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 GRINAQ7Z429 371 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 CMIPQ8IY22 773 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ANKFN1Q8N957 763 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 FAM71CQ8NEG0 241 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 KISS1RQ969F8 398 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF775Q96BV0 537 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ZHX1-C8orf76Q96EF9 292 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 C18orf12Q96KH6 178 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 PSD2Q9BQI7 771 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 CCDC106Q9BWC9 280 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 GSX1Q9H4S2 264 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 TMBIM4Q9HC24 238 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 CHRNA9Q9UGM1 479 aa11.32□□□□□ -0.6
PTPRF-214ENST00000496043 ING1Q9UK53 422 aaPredicted RBP11.32□□□□□ -0.6
PTPRF-214ENST00000496043 AGAP5A6NIR3 686 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 RFXANKO14593 260 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 SMAD9O15198 467 aaKnown RBP11.31□□□□□ -0.6
PTPRF-214ENST00000496043 BCAS1O75363 584 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-214ENST00000496043 C1QCP02747 245 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 IL7RP16871 459 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 CDKN2CP42773 168 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 MAGEA8P43361 318 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 HTR3AP46098 478 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 PDK3Q15120 406 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 TSC22D1Q15714 1073 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 GSTA3Q16772 222 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 BEND6Q5SZJ8 279 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-214ENST00000496043 Q6ZT83 130 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 GALNT5Q7Z7M9 940 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 HMGN2P46Q86SG4 172 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 BIVMQ86UB2 503 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 ADGRG3Q86Y34 549 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF100Q8IYN0 542 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 CNOT9Q92600 299 aaKnown RBP11.31□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF75CPQ92670 426 aaPredicted RBP11.31□□□□□ -0.6
PTPRF-214ENST00000496043 TLCD1Q96CP7 247 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 MAELQ96JY0 434 aaKnown RBP11.31□□□□□ -0.6
PTPRF-214ENST00000496043 TMEM204Q9BSN7 226 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 SLC38A1Q9H2H9 487 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 PRDM4Q9UKN5 801 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 HDGFL3Q9Y3E1 203 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 MTORP42345 2549 aa11.31□□□□□ -0.6
PTPRF-214ENST00000496043 CLDN24A6NM45 220 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 KLF11O14901 512 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 UBDO15205 165 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 TMCC2O75069 709 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ANP32DO95626 131 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 CNOT4O95628 575 aaKnown RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 PMS2P2O95744 297 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 PLAUP00749 431 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 DBIP07108 87 aaKnown RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 FESP07332 822 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 CHRM4P08173 479 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 INHBBP09529 407 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ZCCHC18P0CG32 403 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 CCNA2P20248 432 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ADSLP30566 484 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 OR2B6P58173 313 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 CAPRIN1Q14444 709 aaKnown RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 TAB1Q15750 504 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 SLC9B1Q4ZJI4 515 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 Q5PR19 223 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 COX20Q5RI15 118 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 BHLHA15Q7RTS1 189 aaPredicted RBP11.3□□□□□ -0.6
PTPRF-214ENST00000496043 KRTAP1-3Q8IUG1 177 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 ZNF611Q8N823 705 aa11.3□□□□□ -0.6
PTPRF-214ENST00000496043 PIWIL2Q8TC59 973 aaKnown RBP11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms