RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 PSMD9O00233 223 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CREBL2O60519 120 aaPredicted RBP10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PPM1BO75688 479 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GYPBP06028 91 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CD3GP09693 182 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OMPP47874 163 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RAE1P78406 368 aaKnown RBP10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SLC3A1Q07837 685 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ARHGAP40Q5TG30 622 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MEDAGQ5VYS4 303 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR8J2Q8NGG1 315 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 EMC7Q9NPA0 242 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM184CQ9NVA4 438 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C2orf42Q9NWW7 574 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CNOT2Q9NZN8 540 aaKnown RBP10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ANKRD36A6QL64 1941 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 M0R082 166 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SPINT1O43278 529 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KCNJ13O60928 360 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SNAPC5O75971 98 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CD2P06729 351 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ACSM4P0C7M7 580 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RHCEP18577 417 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ETV6P41212 452 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GK2Q14410 553 aaPredicted RBP10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GGTA1PQ4G0N0 100 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLLU1Q5K131 121 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NLRP8Q86W28 1048 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 NRMQ8IXM6 262 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLRN3Q8NCR9 226 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C2CD4CQ8TF44 421 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRRC46Q96FV0 321 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRR1Q96L50 414 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DGAT2Q96PD7 388 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF639Q9UID6 485 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PPIL1Q9Y3C6 166 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FKBP7Q9Y680 259 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KCNE3Q9Y6H6 103 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SPEGQ15772 3267 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 WRBO00258 174 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TFPIP10646 304 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ST6GAL1P15907 406 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CDH11P55287 796 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RAB2AP61019 212 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MTFR2Q6P444 385 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SERPINA11Q86U17 422 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PTOV1Q86YD1 416 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 STOML3Q8TAV4 291 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 SP7Q8TDD2 431 aaPredicted RBP10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TMEM27Q9HBJ8 222 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TAS2R10Q9NYW0 307 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CLEC1BQ9P126 229 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 KLHL42Q9P2K6 505 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CCL27Q9Y4X3 112 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CSNK1G3Q9Y6M4 447 aa10□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 AGAP14A8MT82 685 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRKYO43930 277 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FMO6PO60774 539 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GLAP06280 429 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CSRP3P50461 194 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CAPZA1P52907 286 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GFERP55789 205 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DPTQ07507 201 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LRRC37A5PQ49AS3 106 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TCTE1Q5JU00 501 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OTPQ5XKR4 325 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ZNF793Q6ZN11 406 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CBLL1Q75N03 491 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR51G2Q8NGK0 314 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 OR2I1PQ8NGU4 316 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PIGXQ8TBF5 258 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 C1QTNF2Q9BXJ5 285 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MYNNQ9NPC7 610 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TXNL4BQ9NX01 149 aaKnown RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TRAPPC4Q9Y296 219 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PADI2Q9Y2J8 665 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ASB4Q9Y574 426 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PCDHGA6Q9Y5G7 932 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 A0A1B0GVT2 93 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PRAMEF26H0Y7S4 382 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 YKT6O15498 198 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FARS2O95363 451 aaKnown RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 GASTP01350 101 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RLN2P04090 185 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 TPOP07202 933 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CBR1P16152 277 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 LSM11P83369 360 aaKnown RBP eCLIP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FAM71E1Q6IPT2 247 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 RDH10Q8IZV5 341 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 WDSUB1Q8N9V3 476 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 FOXN4Q96NZ1 517 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CRB3Q9BUF7 120 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ATXN7L1Q9ULK2 861 aaPredicted RBP9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 IQCMA0A1B0GVH7 501 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 DAPL1A0PJW8 107 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 PAPLNO95428 1278 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 MAOAP21397 527 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 ENPP1P22413 925 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 CD38P28907 300 aa9.99□□□□□ -0.81
MSH5-SAPCD1-207ENST00000493662 XCR1P46094 333 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms