RNA–Protein interactions for RNA: ENST00000493468.6

PRPF40A-211, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,043 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-211ENST00000493468 ZHX1-C8orf76Q96EF9 292 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 L3HYPDHQ96EM0 354 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 C16orf58Q96GQ5 468 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 BOD1Q96IK1 185 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 EGLN2Q96KS0 407 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 VRK1Q99986 396 aaPredicted RBP12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 PLK3Q9H4B4 646 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 ANKZF1Q9H8Y5 726 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 MOKQ9UQ07 419 aa12.42□□□□□ -0.42
PRPF40A-211ENST00000493468 GTPBP1O00178 669 aaKnown RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 SULT2B1O00204 365 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 ZNF264O43296 627 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 WNT11O96014 354 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 NTF4P34130 210 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 IDH3GP51553 393 aaPredicted RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 PRKAA2P54646 552 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 ATP12AP54707 1039 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 FOXG1P55316 489 aaPredicted RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 PRPS1P60891 318 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 TGFBR3Q03167 851 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 LGALS3BPQ08380 585 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 NDUFAF6Q330K2 333 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 ZNF385BQ569K4 471 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 RINLQ6ZS11 566 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 USP43Q70EL4 1123 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 SLC22A9Q8IVM8 553 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 SPATA4Q8NEY3 305 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 ZNF418Q8TF45 676 aaPredicted RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 JADE3Q92613 823 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 CDS1Q92903 461 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 OTUB1Q96FW1 271 aaPredicted RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 RBM4Q9BWF3 364 aaKnown RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 RAB1BQ9H0U4 201 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 METTL17Q9H7H0 456 aaPredicted RBP12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 SERINC1Q9NRX5 453 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 CA10Q9NS85 328 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 DTNAQ9Y4J8 743 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 PCDHB14Q9Y5E9 798 aa12.41□□□□□ -0.42
PRPF40A-211ENST00000493468 PMS2P2O95744 297 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 HMGN2P05204 90 aaKnown RBP12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 UBL4AP11441 157 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 DAOP14920 347 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 PAX7P23759 505 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 PRPH2P23942 346 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 ATP5F1P24539 256 aaPredicted RBP12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 KHKP50053 298 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 FOXA1P55317 472 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 HILS1P60008 231 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 GNG11P61952 73 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 PDE7AQ13946 482 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 KIAA0040Q15053 153 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 ADIPOQQ15848 244 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 TEX35Q5T0J7 233 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 DCST2Q5T1A1 773 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 ANKRD26P1Q6NSI1 321 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 CDC73Q6P1J9 531 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 LCA5Q86VQ0 697 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 ZNF786Q8N393 782 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 TMCO5AQ8N6Q1 288 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 OR52E4Q8NGH9 312 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 NEU4Q8WWR8 484 aaPredicted RBP12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 PPCDCQ96CD2 204 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 FAM120BQ96EK7 910 aaKnown RBP12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 SNX18Q96RF0 628 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 PAFAH2Q99487 392 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 CCT7Q99832 543 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 KATNB1Q9BVA0 655 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 REEP4Q9H6H4 257 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 ZNF696Q9H7X3 374 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 OBP2BQ9NPH6 170 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 RRAGDQ9NQL2 400 aaPredicted RBP12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 NINJ2Q9NZG7 142 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 ZNF180Q9UJW8 692 aa12.4□□□□□ -0.42
PRPF40A-211ENST00000493468 B4DSR2 109 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 TRIM49D1C9J1S8 452 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 H3BQF6 201 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 TRIM77I1YAP6 450 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 ERCC1P07992 297 aaPredicted RBP12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 PGCP20142 388 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 LIMS1P48059 325 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 CCR4P51679 360 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 ARFIP2P53365 341 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 SKP2Q13309 424 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 RIN1Q13671 783 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 LASP1Q14847 261 aaKnown RBP12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 KLHL24Q6TFL4 600 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 GLCCI1Q86VQ1 547 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 RELL1Q8IUW5 271 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 RFWD2Q8NHY2 731 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 TMEM234Q8WY98 164 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 FCRL1Q96LA6 429 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 LAT2Q9GZY6 243 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 QRSL1Q9H0R6 528 aaKnown RBP12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 GSTO2Q9H4Y5 243 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 MID1IP1Q9NPA3 183 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 SIRT3Q9NTG7 399 aaPredicted RBP12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 ZCCHC3Q9NUD5 404 aaKnown RBP12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 PARPBPQ9NWS1 579 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 SLC9A8Q9Y2E8 581 aa12.39□□□□□ -0.43
PRPF40A-211ENST00000493468 HDGFL3Q9Y3E1 203 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms