RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ZYG11AQ6WRX3 759 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 RFLNBQ8N5W9 214 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 OR2T11Q8NH01 316 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 IFT81Q8WYA0 676 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 CCDC126Q96EE4 140 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 FOXN4Q96NZ1 517 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 SORCS2Q96PQ0 1159 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 THUMPD3Q9BV44 507 aaKnown RBP12.23□□□□□ -0.45
VARS-227ENST00000489979 ACTRT3Q9BYD9 372 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 SERINC1Q9NRX5 453 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 EMCNQ9ULC0 261 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 DYSFO75923 2080 aa12.23□□□□□ -0.45
VARS-227ENST00000489979 ATP6V1G2-DDX39BF2Z307 99 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 TCF21O43680 179 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 SESN3P58005 492 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 NAA20P61599 178 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 RPL38P63173 70 aaKnown RBP12.22□□□□□ -0.45
VARS-227ENST00000489979 MERTKQ12866 999 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 TP53BP2Q13625 1128 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 SWI5Q1ZZU3 235 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 RFTN2Q52LD8 501 aaPredicted RBP12.22□□□□□ -0.45
VARS-227ENST00000489979 SYT14P1Q58G82 188 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 CFAP157Q5JU67 520 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 PDZK1Q5T2W1 519 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 C9orf135Q5VTT2 229 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 SYT10Q6XYQ8 523 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 OR52E4Q8NGH9 312 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 ST8SIA1Q92185 356 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 ANP32BQ92688 251 aaKnown RBP12.22□□□□□ -0.45
VARS-227ENST00000489979 MTERF3Q96E29 417 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 DNAJA3Q96EY1 480 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 SOX7Q9BT81 388 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 PLA2G12AQ9BZM1 189 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 LAT2Q9GZY6 243 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 C12orf65Q9H3J6 166 aaKnown RBP12.22□□□□□ -0.45
VARS-227ENST00000489979 GPATCH2Q9NW75 528 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 MALT1Q9UDY8 824 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 FAF1Q9UNN5 650 aaPredicted RBP12.22□□□□□ -0.45
VARS-227ENST00000489979 FIS1Q9Y3D6 152 aa12.22□□□□□ -0.45
VARS-227ENST00000489979 LOC390937A0A1W2PQ73 354 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 SERINC4A6NH21 518 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 PDLIM1O00151 329 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 MRPL33O75394 65 aaKnown RBP12.21□□□□□ -0.45
VARS-227ENST00000489979 TFPIP10646 304 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 ZNF23P17027 643 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 ITGA2P17301 1181 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 ECHS1P30084 290 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 CCT3P49368 545 aaKnown RBP12.21□□□□□ -0.45
VARS-227ENST00000489979 SLC25A3Q00325 362 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 CKAP4Q07065 602 aaKnown RBP12.21□□□□□ -0.45
VARS-227ENST00000489979 SKP2Q13309 424 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 C12orf54Q6X4T0 127 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 R3HCC1LQ7Z5L2 792 aaKnown RBP12.21□□□□□ -0.45
VARS-227ENST00000489979 MEX3DQ86XN8 651 aaKnown RBP12.21□□□□□ -0.45
VARS-227ENST00000489979 ANKS4BQ8N8V4 417 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 OR56A1Q8NGH5 318 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 ACMSDQ8TDX5 336 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 ZHX1-C8orf76Q96EF9 292 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 BPESC1Q9GZL8 116 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 GRPEL1Q9HAV7 217 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 SLC17A5Q9NRA2 495 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 DCDC2Q9UHG0 476 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 AMDHD2Q9Y303 409 aa12.21□□□□□ -0.45
VARS-227ENST00000489979 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP12.21□□□□□ -0.45
VARS-227ENST00000489979 GPR171O14626 319 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 DNAJA2O60884 412 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 KRT16P08779 473 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 LINC00032P0C843 101 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 LAMP1P11279 417 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 NEFHP12036 1026 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 BCKDHAP12694 445 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 DDX5P17844 614 aaKnown RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 CFPP27918 469 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 ASMTP46597 345 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 DNAJB13P59910 316 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 SNRPD2P62316 118 aaKnown RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 ETF1P62495 437 aaKnown RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 SPDYE7PQ495Y7 208 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 GALNTL6Q49A17 601 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 LIPMQ5VYY2 423 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 CCDC103Q8IW40 242 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 OR7A2PQ8NGA2 310 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 OR5D16Q8NGK9 328 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 PIGXQ8TBF5 258 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 SLC25A43Q8WUT9 341 aaPredicted RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 TMEM234Q8WY98 164 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 ARL5BQ96KC2 179 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 OR7D2Q96RA2 312 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 SDF2Q99470 211 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 VRK1Q99986 396 aaPredicted RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 TUBB1Q9H4B7 451 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 MYOZ1Q9NP98 299 aaPredicted RBP12.2□□□□□ -0.46
VARS-227ENST00000489979 ACER3Q9NUN7 267 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 UPB1Q9UBR1 384 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 ATP6V1HQ9UI12 483 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 KCNE5Q9UJ90 142 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 DCTN4Q9UJW0 460 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 MOKQ9UQ07 419 aa12.2□□□□□ -0.46
VARS-227ENST00000489979 TMED5Q9Y3A6 229 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms