RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 COX15Q7KZN9 410 aa16.46■□□□□ 0.23
NPHP4-209ENST00000489180 TCTEX1D2Q8WW35 142 aa16.46■□□□□ 0.23
NPHP4-209ENST00000489180 PDLIM5Q96HC4 596 aaKnown RBP16.46■□□□□ 0.23
NPHP4-209ENST00000489180 ZNF681Q96N22 645 aa16.46■□□□□ 0.23
NPHP4-209ENST00000489180 CRB3Q9BUF7 120 aa16.46■□□□□ 0.23
NPHP4-209ENST00000489180 ANKRD28O15084 1053 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 DOK2O60496 412 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 ADAMTS4O75173 837 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 PRKRAO75569 313 aaKnown RBP16.46■□□□□ 0.22
NPHP4-209ENST00000489180 HLA-FP30511 346 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 VASPP50552 380 aaPredicted RBP16.46■□□□□ 0.22
NPHP4-209ENST00000489180 MRPS10P82664 201 aaKnown RBP16.46■□□□□ 0.22
NPHP4-209ENST00000489180 ENTHD1Q8IYW4 607 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 SLC38A5Q8WUX1 472 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 ELP4Q96EB1 424 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 TSPAN10Q9H1Z9 355 aaPredicted RBP16.46■□□□□ 0.22
NPHP4-209ENST00000489180 SLC35A3Q9Y2D2 325 aa16.46■□□□□ 0.22
NPHP4-209ENST00000489180 OR6C6A6NF89 314 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 SMLR1H3BR10 107 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 SNRNP70P08621 437 aaKnown RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 SEC61A1P61619 476 aaKnown RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 NKX6-1P78426 367 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 GPR18Q14330 331 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 SLC9A3R2Q15599 337 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 KLHDC9Q8NEP7 349 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 OR51Q1Q8NH59 317 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 GALNT9Q9HCQ5 603 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 ABRACLQ9P1F3 81 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 EDIL3O43854 480 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 IRF2P14316 349 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 COX20Q5RI15 118 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 ALKAL2Q6UX46 152 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 MRPL21Q7Z2W9 205 aaKnown RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 OR13F1Q8NGS4 319 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 OR9A4Q8NGU2 314 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 ZNF419Q96HQ0 510 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 MRI1Q9BV20 369 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 PAPOLGQ9BWT3 736 aaKnown RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 BTBD2Q9BX70 525 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 PSORS1C1Q9UIG5 152 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 ENTPD2Q9Y5L3 495 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 SERPINE2P07093 398 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 NDUFAF7Q7L592 441 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 GLB1L2Q8IW92 636 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 OR5M11Q96RB7 305 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 CLSTN3Q9BQT9 956 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 MKRN2Q9H000 416 aaKnown RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 TUBB1Q9H4B7 451 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 KCNJ16Q9NPI9 418 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 ADAM18Q9Y3Q7 739 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 TMEM269A0A1B0GVZ9 245 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 PRSS38A1L453 326 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 TAZQ16635 292 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 LDLRAD1Q5T700 205 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 FAM3CQ92520 227 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 FOXRED1Q96CU9 486 aaPredicted RBP16.45■□□□□ 0.22
NPHP4-209ENST00000489180 MALSU1Q96EH3 234 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 ARHGAP9Q9BRR9 750 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 B3GNT2Q9NY97 397 aa16.45■□□□□ 0.22
NPHP4-209ENST00000489180 GJE1A6NN92 205 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 OR8G3PP0DMU2 310 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 DEFB103AP81534 67 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 BTN1A1Q13410 526 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 MEF2DQ14814 521 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 ARHGAP19Q14CB8 494 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 SLC6A19Q695T7 634 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 GPR139Q6DWJ6 353 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 CPXM2Q8N436 756 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 LILRB4Q8NHJ6 448 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 DUSP19Q8WTR2 217 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 KHSRPQ92945 711 aaKnown RBP eCLIP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 PGAP2Q9UHJ9 254 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 GAPDHSO14556 408 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 ACOT8O14734 319 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 ZNF26P17031 533 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 TRA2BP62995 288 aaKnown RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 TDGQ13569 410 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 FGL2Q14314 439 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 Q6ZSR9 355 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 SFXN2Q96NB2 322 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 INSM2Q96T92 566 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 CDH20Q9HBT6 801 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 HHLA2Q9UM44 414 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 TSPAN11A1L157 253 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 CLDN6P56747 220 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 BCL2A1Q16548 175 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 ZNF546Q86UE3 836 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 OR1J4Q8NGS1 313 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 NUDT8Q8WV74 236 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 IL1F10Q8WWZ1 152 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 ZNF582Q96NG8 517 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 C8orf33Q9H7E9 229 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 INPP5EQ9NRR6 644 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 ZFP57Q9NU63 452 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 NPC1O15118 1278 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 SSX4O60224 188 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 CHATP28329 748 aa16.44■□□□□ 0.22
NPHP4-209ENST00000489180 HOXD9P28356 352 aaPredicted RBP16.44■□□□□ 0.22
NPHP4-209ENST00000489180 GABRA5P31644 462 aa16.44■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms