RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PNPT1Q8TCS8 783 aaKnown RBP12.52□□□□□ -0.41
UPF3A-204ENST00000475218 OIT3Q8WWZ8 545 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 ARL8AQ96BM9 186 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 S100PBPQ96BU1 408 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 ARL5BQ96KC2 179 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 TRNT1Q96Q11 434 aaKnown RBP12.52□□□□□ -0.41
UPF3A-204ENST00000475218 OR5B2Q96R09 309 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 TMEM204Q9BSN7 226 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 OR10A4Q9H209 315 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 MANSC1Q9H8J5 431 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 UBTD1Q9HAC8 227 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 TIGARQ9NQ88 270 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 CTPS2Q9NRF8 586 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 GPR52Q9Y2T5 361 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 ARID1AO14497 2285 aa12.52□□□□□ -0.41
UPF3A-204ENST00000475218 AGAP5A6NIR3 686 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 TRPC5OSA6NMA1 111 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PABPC4LP0CB38 370 aaKnown RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PPP3CBP16298 524 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PGCP20142 388 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SLC7A1P30825 629 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 NTF4P34130 210 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 DIO1P49895 249 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PPP2R2AP63151 447 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 GTDC1Q4AE62 458 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PDCD4Q53EL6 469 aaKnown RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 GPAT3Q53EU6 434 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 TMEM201Q5SNT2 666 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 GTF2IRD2BQ6EKJ0 949 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF621Q6ZSS3 439 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 GTF2IRD2Q86UP8 949 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ADGRG3Q86Y34 549 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 OR9I1Q8NGQ6 314 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF775Q96BV0 537 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PIP5K1AQ99755 562 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SMR3AQ99954 134 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 EXOSC3Q9NQT5 275 aaKnown RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SDR39U1Q9NRG7 319 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 PRSS50Q9UI38 385 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SLC35A3Q9Y2D2 325 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 NSD1Q96L73 2696 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 RAMP1O60894 148 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 FESP07332 822 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 RYKP34925 604 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 NKX6-1P78426 367 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SYT14P1Q58G82 188 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 BEX5Q5H9J7 111 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SFRP5Q5T4F7 317 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ABLIM2Q6H8Q1 611 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 DNAJC14Q6Y2X3 702 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 TMPPEQ6ZT21 453 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ZC3HAV1Q7Z2W4 902 aaKnown RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 SLC43A2Q8N370 569 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 LILRB1Q8NHL6 650 aaPredicted RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 DNAJA3Q96EY1 480 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 REXO5Q96IC2 774 aaKnown RBP12.51□□□□□ -0.41
UPF3A-204ENST00000475218 OR11A1Q9GZK7 315 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF446Q9NWS9 450 aa12.51□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF716A6NP11 495 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 KLF11O14901 512 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 SLC22A3O75751 556 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 ADAP00813 363 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 IDO1P14902 403 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 HOXB9P17482 250 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-204ENST00000475218 OR3A2P47893 321 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 ATG16L1Q676U5 607 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 LRRC74BQ6ZQY2 392 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 STK32CQ86UX6 486 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 WFDC8Q8IUA0 241 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 GLB1L3Q8NCI6 653 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-204ENST00000475218 TMEM234Q8WY98 164 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 VPS33AQ96AX1 596 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 AURKBQ96GD4 344 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-204ENST00000475218 PLPPR2Q96GM1 343 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 RSPO3Q9BXY4 272 aaPredicted RBP12.5□□□□□ -0.41
UPF3A-204ENST00000475218 CHST2Q9Y4C5 530 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 DSPPQ9NZW4 1301 aa12.5□□□□□ -0.41
UPF3A-204ENST00000475218 SLCO1B7G3V0H7 640 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 ETFAP13804 333 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 FOSL1P15407 271 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 HOXB4P17483 251 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 APOBEC1P41238 236 aaKnown RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 IDH2P48735 452 aaKnown RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 RASGEF1BQ0VAM2 473 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 TAB1Q15750 504 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 NXNQ6DKJ4 435 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF704Q6ZNC4 412 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 GRINAQ7Z429 371 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 CIARTQ8N365 385 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 PIWIL2Q8TC59 973 aaKnown RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 POM121Q96HA1 1249 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.49□□□□□ -0.41
UPF3A-204ENST00000475218 RLIMQ9NVW2 624 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 NKIRAS1Q9NYS0 192 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 KLHL9Q9P2J3 617 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 CHRNA9Q9UGM1 479 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 LIPT1Q9Y234 373 aa12.49□□□□□ -0.41
UPF3A-204ENST00000475218 IGKV3D-15A0A087WSY6 115 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 ZNF724A8MTY0 619 aa12.48□□□□□ -0.41
UPF3A-204ENST00000475218 RFXANKO14593 260 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 92.4 ms