RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 LDAHQ9H6V9 325 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 NDUFAF4Q9P032 175 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 STOML1Q9UBI4 398 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 RPS6KB2Q9UBS0 482 aa13.73□□□□□ -0.21
NPHP4-205ENST00000466897 PRRC2CQ9Y520 2896 aaKnown RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 ERICH4A6NGS2 130 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 B8ZZF3 427 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF208O43345 1280 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 CHP2O43745 196 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 PRSS23O95084 383 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 FABP3P05413 133 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 RAP2AP10114 183 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 RHCEP18577 417 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 TACR3P29371 465 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 IFNA8P32881 189 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 RAC1P63000 192 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 VLDLRP98155 873 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 CHRNB3Q05901 458 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 CRYZQ08257 329 aaKnown RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 MERTKQ12866 999 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 ALG10BQ5I7T1 473 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 COLEC12Q5KU26 742 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 DEF8Q6ZN54 512 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 TSEN54Q7Z6J9 526 aaKnown RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 CYP4Z1Q86W10 505 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 SPATA24Q86W54 205 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 OFCC1Q8IZS5 231 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 PAPD5Q8NDF8 572 aaKnown RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 SLC38A4Q969I6 547 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 SARAFQ96BY9 339 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 MPP4Q96JB8 637 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 NPAS1Q99742 590 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 TSPAN10Q9H1Z9 355 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 SERINC1Q9NRX5 453 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 CHRNA9Q9UGM1 479 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 OSGIN1Q9UJX0 560 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 A4GNTQ9UNA3 340 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 RPH3AQ9Y2J0 694 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 SPIN1Q9Y657 262 aaPredicted RBP13.72□□□□□ -0.21
NPHP4-205ENST00000466897 V9GYQ6 96 aa13.72□□□□□ -0.21
NPHP4-205ENST00000466897 SVILO95425 2214 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ARHGAP21Q5T5U3 1957 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CPSF4LA6NMK7 179 aaKnown RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 GJE1A6NN92 205 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 C1QL1O75973 258 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 PEPDP12955 493 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CPN1P15169 458 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 BMP7P18075 431 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CLK1P49759 484 aaKnown RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 LHX2P50458 406 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 TAS2R41P59536 307 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 FOXK1P85037 733 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ST3GAL3Q11203 375 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CCNIQ14094 377 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 C5orf46Q6UWT4 87 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 LINC00114Q6XXX2 140 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF605Q86T29 641 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 TSPYL5Q86VY4 417 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ADGRG3Q86Y34 549 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZGRF1Q86YA3 2104 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZDHHC21Q8IVQ6 265 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CHERPQ8IWX8 916 aaKnown RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 C10orf67Q8IYJ2 551 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF843Q8N446 348 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ST6GALNAC3Q8NDV1 305 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CANT1Q8WVQ1 401 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ABTB1Q969K4 478 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 DHRS1Q96LJ7 313 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF347Q96SE7 839 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 SEPHS2Q99611 448 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF426Q9BUY5 554 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ANKRD19PQ9H560 264 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 EXO5Q9H790 373 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CTPS2Q9NRF8 586 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 CCM2LQ9NUG4 571 aaPredicted RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 SELENONQ9NZV5 590 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 SPRR3Q9UBC9 169 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 SLC6A5Q9Y345 797 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 ZNF337Q9Y3M9 751 aa13.71□□□□□ -0.21
NPHP4-205ENST00000466897 FAM32AQ9Y421 112 aaKnown RBP13.71□□□□□ -0.21
NPHP4-205ENST00000466897 A0A087WUJ7 227 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 TMED7-TICAM2A0A0A6YYA0 188 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 SHISA8B8ZZ34 492 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 FFAR1O14842 300 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 BCKDKO14874 412 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 EFNA2O43921 213 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 WISP2O76076 250 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 LYPD3O95274 346 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 THY1P04216 161 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 ZNF708P17019 499 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 SLC7A1P30825 629 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 MLLT10P55197 1068 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 CDH12P55289 794 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 PM20D2Q8IYS1 436 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 PIK3C3Q8NEB9 887 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 SLC41A3Q96GZ6 507 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 RSRC1Q96IZ7 334 aaKnown RBP13.7□□□□□ -0.22
NPHP4-205ENST00000466897 PIP5K1AQ99755 562 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 TMEM43Q9BTV4 400 aa13.7□□□□□ -0.22
NPHP4-205ENST00000466897 PRR14Q9BWN1 585 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms