RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DUX1O43812 170 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SNX3O60493 162 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 BANF1O75531 89 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC25A27O95847 323 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 PTTG1O95997 202 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 IFNA5P01569 189 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ATXN1LP0C7T5 689 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SERPINA2P20848 420 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 TIMP3P35625 211 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 MRPL19P49406 292 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 HLCSP50747 726 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 DLX5P56178 289 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNK10P57789 538 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 RAP1AP62834 184 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 RGS1Q08116 209 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 INCA1Q0VD86 236 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 UBXN2BQ14CS0 331 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 PGM5Q15124 567 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 PSG3Q16557 428 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 C5orf47Q569G3 176 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 TRIQKQ629K1 86 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 LEMD1Q68G75 181 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 MED27Q6P2C8 311 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ATRAIDQ6UW56 229 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF562Q6V9R5 426 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM144Q7Z5S9 345 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ARPINQ7Z6K5 226 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 TMEM135Q86UB9 458 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 NOXA1Q86UR1 476 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 RANBP3LQ86VV4 465 aaPredicted RBP4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 CARM1Q86X55 608 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 NAXDQ8IW45 347 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 BEND2Q8NDZ0 799 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 OR4M1Q8NGD0 313 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 OR6M1Q8NGM8 313 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 OR14K1Q8NGZ2 314 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SPATA22Q8NHS9 363 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ZFAND1Q8TCF1 268 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ULK4Q96C45 1275 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SFXN2Q96NB2 322 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 DUX5Q96PT3 197 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 PCDHB18PQ96TA0 734 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 CNN2Q99439 309 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 CMKLR1Q99788 373 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 EBF4Q9BQW3 602 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC35A5Q9BS91 424 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 DDA1Q9BW61 102 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 ACTRT3Q9BYD9 372 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 S1PR5Q9H228 398 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 RHOFQ9HBH0 211 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 HMG20AQ9NP66 347 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 TMLHEQ9NVH6 421 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 MRTO4Q9UKD2 239 aaKnown RBP4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 BTBD3Q9Y2F9 522 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 PKP3Q9Y446 797 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 MMP24Q9Y5R2 645 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 NPTNQ9Y639 398 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 SLCO1B1Q9Y6L6 691 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 MUC6Q6W4X9 2439 aa4.43□□□□□ -1.7
CCDC88A-209ENST00000456975 KCNE1BA0A087WTH5 132 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 HYKKA2RU49 373 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SLC38A8A6NNN8 435 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ANKRD66B4E2M5 251 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TRDCB7Z8K6 153 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 KRBOX1C9JBD0 128 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DLGAP1O14490 977 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CHST10O43529 356 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 SERPINA1P01009 418 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 METTL15P1P0C7V9 234 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TBXA2RP21731 343 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 GABRR1P24046 479 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CSF2RBP32927 897 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CD200P41217 278 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PSMD8P48556 350 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DNA2P51530 1060 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 TAS2R39P59534 338 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZP1P60852 638 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PITPNAQ00169 270 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 INSM1Q01101 510 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 RBPJQ06330 500 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PTP4A2Q12974 167 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CTTNQ14247 550 aaKnown RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 GRB14Q14449 540 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CCL14Q16627 93 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 MSMPQ1L6U9 139 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 ZNF630Q2M218 657 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CDNFQ49AH0 187 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DCAF10Q5QP82 559 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 OTUD1Q5VV17 481 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 AGAP6Q5VW22 663 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 C17orf107Q6ZR85 190 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 LINC00299Q6ZSB3 139 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 GALNT10Q86SR1 603 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 COMMD7Q86VX2 200 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CCDC60Q8IWA6 550 aaPredicted RBP4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 WDFY1Q8IWB7 410 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 DHRSXQ8N5I4 330 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 EXD3Q8N9H8 876 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 PROKR2Q8NFJ6 384 aa4.42□□□□□ -1.7
CCDC88A-209ENST00000456975 CD200R1Q8TD46 325 aa4.42□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms