RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 HAS3O00219 553 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ARNTLO00327 626 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CBX7O95931 251 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 PTHP01270 115 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 GABRB1P18505 474 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 NDUFV2P19404 249 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 S1PR1P21453 382 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 UQCRC2P22695 453 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 FPR3P25089 353 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 NCBP2P52298 156 aaKnown RBP eCLIP12.48□□□□□ -0.41
USP40-208ENST00000450966 PLGLB1Q02325 96 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 DSC1Q08554 894 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 VEZF1Q14119 521 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CLINT1Q14677 625 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 TEX26Q8N6G2 289 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 OR52N1Q8NH53 320 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 NXPE3Q969Y0 559 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 MARVELD3Q96A59 401 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CNN2Q99439 309 aaKnown RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 NMNAT1Q9HAN9 279 aaPredicted RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 SPHK2Q9NRA0 654 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 UNC119BA6NIH7 251 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 SYT7O43581 403 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 SERPINA7P05543 415 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 HCKP08631 526 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CSF3P09919 207 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 NKX3-2P78367 333 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 TPRG1Q6ZUI0 275 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 CCDC71LQ8N9Z2 235 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 SLC25A46Q96AG3 418 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 INTS14Q96SY0 518 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 WWTR1Q9GZV5 400 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 MEGF11A6BM72 1044 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 TRAF3IP2O43734 574 aaPredicted RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 KLF8O95600 359 aaPredicted RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 ITGA5P08648 1049 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 JMJD7P0C870 316 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ADRB3P13945 408 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 HEPHL1Q6MZM0 1159 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ACOT7LQ6ZUV0 252 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 UEVLDQ8IX04 471 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ZC3H3Q8IXZ2 948 aaKnown RBP12.48□□□□□ -0.41
USP40-208ENST00000450966 CMTM8Q8IZV2 173 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 UCN3Q969E3 161 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 SLCO5A1Q9H2Y9 848 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 ADAP2Q9NPF8 381 aa12.48□□□□□ -0.41
USP40-208ENST00000450966 MYH8P13535 1937 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 TMEM200CA6NKL6 621 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 LOC730098B7Z3J9 87 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 TAAR5O14804 337 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 MT-CO2P00403 227 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 SDHAP31040 664 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 CASP6P55212 293 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 BIDP55957 195 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 TMEM173Q86WV6 379 aaPredicted RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 OR4K17Q8NGC6 315 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 OR1E3Q8WZA6 343 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 RGMAQ96B86 450 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 DGAT2Q96PD7 388 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 LMAN1LQ9HAT1 526 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 APOBEC3GQ9HC16 384 aaKnown RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 INPP5EQ9NRR6 644 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 WNT6Q9Y6F9 365 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 COL16A1Q07092 1604 aaPredicted RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 LNP1A1A4G5 178 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 CD80P33681 288 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 CD300CQ08708 224 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 FOXO1Q12778 655 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 HNF4GQ14541 408 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 TAF9Q16594 264 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 SHEQ5VZ18 495 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 RDH10Q8IZV5 341 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 LILRB2Q8N423 598 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 FAM174AQ8TBP5 190 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 SMIM3Q9BZL3 60 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 NMNAT2Q9BZQ4 307 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 FGF4P08620 206 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 RPL29P47914 159 aaKnown RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 WDR5P61964 334 aaKnown RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 FBXL22Q6P050 247 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 PLA2G15Q8NCC3 412 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 SCAMP5Q8TAC9 235 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 MCOLN1Q9GZU1 580 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 C1GALT1Q9NS00 363 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 SLCO1B1Q9Y6L6 691 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 TRABD2BA6NFA1 517 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 VNN1O95497 513 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 APBB3O95704 486 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 C6P13671 934 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 TMEM11P17152 192 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 ACSM3Q53FZ2 586 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 PHF19Q5T6S3 580 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 GGNBP1Q5YKI7 109 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 CILP2Q8IUL8 1156 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 SPRYD4Q8WW59 207 aaPredicted RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 RSC1A1Q92681 617 aa12.47□□□□□ -0.41
USP40-208ENST00000450966 CMSS1Q9BQ75 279 aaKnown RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 AK6Q9Y3D8 172 aaKnown RBP12.47□□□□□ -0.41
USP40-208ENST00000450966 GPR39O43194 453 aa12.46□□□□□ -0.41
USP40-208ENST00000450966 IFNGR1P15260 489 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms