RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 CHRNB3Q05901 458 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 PCLAFQ15004 111 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF141Q15928 474 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 NDUFAF6Q330K2 333 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 SYT14P1Q58G82 188 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 DNM1P46Q6ZS02 220 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 C16orf62Q7Z3J2 963 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF433Q8N7K0 673 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF75CPQ92670 426 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-204ENST00000448905 TUBGCP3Q96CW5 907 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 TNFRSF13CQ96RJ3 184 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 KCNK17Q96T54 332 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 BEX2Q9BXY8 128 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 ING1Q9UK53 422 aaPredicted RBP11.74□□□□□ -0.53
HMGB3-204ENST00000448905 PMF1-BGLAPU3KQ54 211 aa11.74□□□□□ -0.53
HMGB3-204ENST00000448905 DNPH1O43598 174 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 FCMRO60667 390 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 DNAJA2O60884 412 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 NDUFS7O75251 213 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 CHRNGP07510 517 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 UBTFL6P0CB48 400 aaPredicted RBP11.73□□□□□ -0.53
HMGB3-204ENST00000448905 SLC25A16P16260 332 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 COX5AP20674 150 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 MAGEA8P43361 318 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 TGFBR3Q03167 851 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 CHRNEQ04844 493 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 PTGR1Q14914 329 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 ARHGAP11BQ3KRB8 267 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 C1QTNF12Q5T7M4 302 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 ATG4DQ86TL0 474 aaPredicted RBP11.73□□□□□ -0.53
HMGB3-204ENST00000448905 MUC15Q8N387 334 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 OR10H5Q8NGA6 315 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 OR52N5Q8NH56 324 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 OR5AK3PQ8NH89 298 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 PIGXQ8TBF5 258 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 AGR3Q8TD06 166 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP11.73□□□□□ -0.53
HMGB3-204ENST00000448905 PMM1Q92871 262 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF300Q96RE9 604 aaPredicted RBP11.73□□□□□ -0.53
HMGB3-204ENST00000448905 C1orf50Q9BV19 199 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 CACNG6Q9BXT2 260 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 QRSL1Q9H0R6 528 aaKnown RBP11.73□□□□□ -0.53
HMGB3-204ENST00000448905 FKRPQ9H9S5 495 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 POLE3Q9NRF9 147 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 MKLN1Q9UL63 735 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 SLC35A3Q9Y2D2 325 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 HDGFL3Q9Y3E1 203 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 ZANQ9Y493 2812 aa11.73□□□□□ -0.53
HMGB3-204ENST00000448905 RAI1Q7Z5J4 1906 aaPredicted RBP11.72□□□□□ -0.53
HMGB3-204ENST00000448905 IGKV3D-15A0A087WSY6 115 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 GOLGA8QA0A0J9YX86 632 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 GOLGA8OA6NCC3 632 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 ESPNB1AK53 854 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 TMEM233B4DJY2 109 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 GOLGA8NF8WBI6 632 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 RAD51DO75771 328 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 UGT2B17O75795 530 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 FAM157CP0CG43 387 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 CD40P25942 277 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 HTR3AP46098 478 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF83P51522 516 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 CLDN8P56748 225 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 HBA1P69905 142 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 EMX2Q04743 252 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 LOXL1Q08397 574 aaPredicted RBP11.72□□□□□ -0.53
HMGB3-204ENST00000448905 SKP2Q13309 424 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 XKR7Q5GH72 579 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 CYB5R2Q6BCY4 276 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 ZNF544Q6NX49 715 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 RIMKLAQ8IXN7 391 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 KRTCAP2Q8N6L1 136 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 OR5D16Q8NGK9 328 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 XAGE5Q8WWM1 108 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 FAM168AQ92567 244 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 APOPT1Q96IL0 206 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 MUS81Q96NY9 551 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 NAA11Q9BSU3 229 aaPredicted RBP11.72□□□□□ -0.53
HMGB3-204ENST00000448905 INPP5KQ9BT40 448 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 MKS1Q9NXB0 559 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 TAS2R16Q9NYV7 291 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 NOP53Q9NZM5 478 aaKnown RBP11.72□□□□□ -0.53
HMGB3-204ENST00000448905 UPB1Q9UBR1 384 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 LPAR3Q9UBY5 353 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 CHRNA9Q9UGM1 479 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 TRAPPC4Q9Y296 219 aa11.72□□□□□ -0.53
HMGB3-204ENST00000448905 IGHV4-30-2A0A087WSY4 118 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 ELOA3DA6NLF2 546 aaPredicted RBP11.71□□□□□ -0.53
HMGB3-204ENST00000448905 E7EQL1 145 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 M0R1B8 84 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 GPRIN2O60269 458 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 EIF1BO60739 113 aaKnown RBP11.71□□□□□ -0.53
HMGB3-204ENST00000448905 H6PDO95479 791 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 PMS2P2O95744 297 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 IGHV3-9P01782 118 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 GUSBP08236 651 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 CSF3P09919 207 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 G6PDP11413 515 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 PTNP21246 168 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 RYKP34925 604 aa11.71□□□□□ -0.53
HMGB3-204ENST00000448905 MAP2K6P52564 334 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms