RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 CTDNEP1O95476 244 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ECDO95905 644 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 HMGN1P05114 100 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 NUDT17P0C025 328 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ZNF44P15621 663 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ZNF3P17036 446 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 CMA1P23946 247 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 HOXA6P31267 233 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 CDH5P33151 784 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 CTNNA1P35221 906 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 EPS15P42566 896 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 CCR4P51679 360 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 RAP1GDS1P52306 607 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 BLVRAP53004 296 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 C21orf59P57076 290 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 NUP107P57740 925 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 NLRP11P59045 1033 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 SSTP61278 116 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 RPS8P62241 208 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 MYBPC1Q00872 1141 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 GTF3C1Q12789 2109 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ASPHQ12797 758 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 PPP2R5CQ13362 524 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 MED21Q13503 144 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 PNOCQ13519 176 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 TFDP1Q14186 410 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 PDK3Q15120 406 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ALX1Q15699 326 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 PRR4Q16378 134 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 HYAL4Q2M3T9 481 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 LRIT3Q3SXY7 679 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 HSP90AA4PQ58FG1 418 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 C16orf54Q6UWD8 224 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 OLFM4Q6UX06 510 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 TFAP2EQ6VUC0 442 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ARPINQ7Z6K5 226 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 DNAJB7Q7Z6W7 309 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 AKAP14Q86UN6 197 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 CCDC36Q8IYA8 594 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ZNF444Q8N0Y2 327 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 CCDC89Q8N998 374 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ZNF565Q8N9K5 539 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 OCC1Q8TAD7 63 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 FANK1Q8TC84 345 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 DTX3LQ8TDB6 740 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 SLC2A14Q8TDB8 520 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 SAP25Q8TEE9 199 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 DDI1Q8WTU0 396 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 CAPSLQ8WWF8 208 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 TRUB1Q8WWH5 349 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 VPS33AQ96AX1 596 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 TAMM41Q96BW9 452 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 RAB3CQ96E17 227 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 TTC25Q96NG3 672 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 C17orf62Q9BQA9 187 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 LLPHQ9BRT6 129 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 NAA11Q9BSU3 229 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 C9orf16Q9BUW7 83 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 GON7Q9BXV9 100 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 ZNF717Q9BY31 904 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 ANKRD2Q9GZV1 360 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 NARFLQ9H6Q4 476 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 C8orf33Q9H7E9 229 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 LIN28AQ9H9Z2 209 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 MRM3Q9HC36 420 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 CD209Q9NNX6 404 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 SAR1AQ9NR31 198 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 PAQR5Q9NXK6 330 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 SLC39A1Q9NY26 324 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 STMN3Q9NZ72 180 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 RSL24D1Q9UHA3 163 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 LAMP5Q9UJQ1 280 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 RPH3AQ9Y2J0 694 aaPredicted RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 NWD2Q9ULI1 1742 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 USP42Q9H9J4 1324 aaKnown RBP2.58□□□□□ -2
LINC01040-201ENST00000425048 LAMB2P55268 1798 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 DOCK2Q92608 1830 aa2.58□□□□□ -2
LINC01040-201ENST00000425048 RAPGEF6Q8TEU7 1601 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 AFDNP55196 1824 aaKnown RBP2.57□□□□□ -2
LINC01040-201ENST00000425048 C1orf232A0A0U1RR37 186 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 A0A0X1KG70 313 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 A0A1B0GWJ7 208 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 ANXA2P2A6NMY6 339 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 ZNF701M0R085 212 aaPredicted RBP2.57□□□□□ -2
LINC01040-201ENST00000425048 GMNNO75496 209 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 DCTN3O75935 186 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 MYO1DO94832 1006 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 GGPS1O95749 300 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 AGTP01019 485 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 IFNA14P01570 189 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 IGHV3-9P01782 118 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 THRAP10827 490 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 PVRP15151 417 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 HPGDP15428 266 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 TAC1P20366 129 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 MUTP22033 750 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 GLRA1P23415 457 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 CCNE1P24864 410 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 PRDX6P30041 224 aa2.57□□□□□ -2
LINC01040-201ENST00000425048 IL2RGP31785 369 aa2.57□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 300.5 ms