RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 ASCL3Q9NQ33 180 aa5.45□□□□□ -1.54
HMGB3-202ENST00000419110 TAS2R10Q9NYW0 307 aa5.45□□□□□ -1.54
HMGB3-202ENST00000419110 CNIH4Q9P003 139 aa5.45□□□□□ -1.54
HMGB3-202ENST00000419110 CARD8Q9Y2G2 431 aa5.45□□□□□ -1.54
HMGB3-202ENST00000419110 PCDHGB6Q9Y5F9 930 aa5.45□□□□□ -1.54
HMGB3-202ENST00000419110 SPIN1Q9Y657 262 aaPredicted RBP5.45□□□□□ -1.54
HMGB3-202ENST00000419110 FREM3P0C091 2139 aa5.45□□□□□ -1.54
HMGB3-202ENST00000419110 LOC101059948A0A1B0GTJ6 334 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 HTR3EA5X5Y0 456 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 UNC119BA6NIH7 251 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ZAR1LA6NP61 321 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 EFCAB9A8MZ26 197 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 M0R3G1 203 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 OIP5O43482 229 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 FADS1O60427 444 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 HCN1O60741 890 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 FAM20BO75063 409 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 AHSA1O95433 338 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 LIFP15018 202 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 PTNP21246 168 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 CHMP24386 653 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 CXCR1P25024 350 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ITGA3P26006 1051 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MSX1P28360 303 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 GTF2E2P29084 291 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SLC6A6P31641 620 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ACAA2P42765 397 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SLC1A3P43003 542 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 HTR3AP46098 478 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 OMPP47874 163 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SLC9A3P48764 834 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 POLR2HP52434 150 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SMSP52788 366 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 CRISP1P54107 249 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MLF1P58340 268 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MYBPC1Q00872 1141 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 CRYZQ08257 329 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 C17orf67Q0P5P2 114 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SNTA1Q13424 505 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MAD2L1BPQ15013 274 aaPredicted RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 QPRTQ15274 297 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MEP1AQ16819 746 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 TMEM44Q2T9K0 475 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 COL28A1Q2UY09 1125 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 PGGHGQ32M88 737 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 RBM48Q5RL73 367 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ABHD17BQ5VST6 288 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ANKRD34AQ69YU3 496 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SLC30A6Q6NXT4 461 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SLC27A4Q6P1M0 643 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 C1orf94Q6P1W5 598 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ARHGAP11AQ6P4F7 1023 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 TMEM154Q6P9G4 183 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 CD300LDQ6UXZ3 194 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 WDR88Q6ZMY6 472 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 C16orf47Q6ZP98 133 aaPredicted RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 RASSF6Q6ZTQ3 369 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 GRINAQ7Z429 371 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 NANOGNBQ7Z5D8 188 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MARCH3Q86UD3 253 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 RPS19BP1Q86WX3 136 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 P3H2Q8IVL5 708 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 NKAIN4Q8IVV8 208 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ARMC10Q8N2F6 343 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SIRT6Q8N6T7 355 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 OR13C2Q8NGS9 318 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 PFN4Q8NHR9 129 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 BRIX1Q8TDN6 353 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ADAMTS17Q8TE56 1095 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 RNF138Q8WVD3 245 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 HDAC2Q92769 488 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 OSTF1Q92882 214 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 NKD1Q969G9 470 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ZNF566Q969W8 418 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 BPIFA2Q96DR5 249 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ARSGQ96EG1 525 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SGTBQ96EQ0 304 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 HRASLS5Q96KN8 279 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SGCZQ96LD1 299 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MUS81Q96NY9 551 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 NODALQ96S42 347 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 PRSS27Q9BQR3 290 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 TMEM43Q9BTV4 400 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ZNF426Q9BUY5 554 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 ADNPQ9H2P0 1102 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 PTGES2Q9H7Z7 377 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 LIN28AQ9H9Z2 209 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 GALNT9Q9HCQ5 603 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 UBAP1Q9NZ09 502 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MED13Q9UHV7 2174 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 DKKL1Q9UK85 242 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 NDRG4Q9ULP0 352 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 SNX5Q9Y5X3 404 aa5.44□□□□□ -1.54
HMGB3-202ENST00000419110 MRPS18BQ9Y676 258 aaKnown RBP5.44□□□□□ -1.54
HMGB3-202ENST00000419110 A0A087WUJ7 227 aa5.43□□□□□ -1.54
HMGB3-202ENST00000419110 A0A087WXM4 84 aa5.43□□□□□ -1.54
HMGB3-202ENST00000419110 A0A087WZY1 265 aa5.43□□□□□ -1.54
HMGB3-202ENST00000419110 IGLV3-32A0A0A0MS00 114 aa5.43□□□□□ -1.54
HMGB3-202ENST00000419110 TMEM200CA6NKL6 621 aa5.43□□□□□ -1.54
HMGB3-202ENST00000419110 SNTNA6NMZ2 147 aa5.43□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 65 ms