RNA–Protein interactions for RNA: ENST00000417656.6

SKA1-203, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2 BASIC

Gene SKA1, Length 1,095 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-203ENST00000417656 RIPPLY2Q5TAB7 128 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 PPP4R4Q6NUP7 873 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 C3orf33Q6P1S2 294 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 CHMP1BQ7LBR1 199 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 ZNF550Q7Z398 422 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 GRINAQ7Z429 371 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 ADGRE4PQ86SQ3 457 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 PATL1Q86TB9 770 aaKnown RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 MICU2Q8IYU8 434 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 LILRA2Q8N149 483 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 CADM2Q8N3J6 435 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 TNIP2Q8NFZ5 429 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 OR10Q1Q8NGQ4 319 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 OR10D3Q8NH80 312 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 OR2V1Q8NHB1 315 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 MBD3L2Q8NHZ7 208 aaPredicted RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 BCAS4Q8TDM0 211 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 FIG4Q92562 907 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 ADGRG7Q96K78 797 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 DOCK7Q96N67 2140 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 HOPXQ9BPY8 73 aaPredicted RBP11.22□□□□□ -0.61
SKA1-203ENST00000417656 COQ10BQ9H8M1 238 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 CTPS2Q9NRF8 586 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 COQ3Q9NZJ6 369 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 STOML1Q9UBI4 398 aa11.22□□□□□ -0.61
SKA1-203ENST00000417656 SLC22A20A6NK97 555 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 FAM90A27PA6NNH2 459 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 M0QX08 132 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 M0R3H8 397 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 CXCL13O43927 109 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 CLDN1O95832 211 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 TGM6O95932 706 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 CCNA2P20248 432 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 CD247P20963 164 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 TACR3P29371 465 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 GSK3BP49841 420 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 RGS8P57771 180 aaPredicted RBP11.21□□□□□ -0.61
SKA1-203ENST00000417656 EEFSECP57772 596 aaKnown RBP11.21□□□□□ -0.61
SKA1-203ENST00000417656 RPS3AP61247 264 aaKnown RBP11.21□□□□□ -0.61
SKA1-203ENST00000417656 KRT72Q14CN4 511 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 PON3Q15166 354 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 LRRC23Q53EV4 343 aaPredicted RBP11.21□□□□□ -0.61
SKA1-203ENST00000417656 HBMQ6B0K9 141 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 ESPNLQ6ZVH7 1005 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 P4HA3Q7Z4N8 544 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 GPR32P1Q8NGA4 272 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 FNDC9Q8TBE3 224 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 ALG2Q9H553 416 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 CALHM2Q9HA72 323 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 SPAG4Q9NPE6 437 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 ABCD2Q9UBJ2 740 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 CHRNA9Q9UGM1 479 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 OSGIN1Q9UJX0 560 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 SLC13A4Q9UKG4 626 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 AP3M1Q9Y2T2 418 aa11.21□□□□□ -0.61
SKA1-203ENST00000417656 PCNX1Q96RV3 2341 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 TMED7-TICAM2A0A0A6YYA0 188 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 A0A1W2PNR3 127 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 ELOVL7A1L3X0 281 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 GJE1A6NN92 205 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 ADAMDEC1O15204 470 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 IL2RAP01589 272 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 AGAP20933 346 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 HTR2AP28223 471 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 SLC7A1P30825 629 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 CHRNB4P30926 498 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 CEACAM8P31997 349 aaPredicted RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 TIMP3P35625 211 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 APOBEC1P41238 236 aaKnown RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 SLC1A3P43003 542 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 POLR2HP52434 150 aaKnown RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 ZNF136P52737 540 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 NCALDP61601 193 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 COPZ1P61923 177 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 MXRA7P84157 204 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 VEZF1Q14119 521 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 SGCBQ16585 318 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 DUSP7Q16829 419 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 TMEM176BQ3YBM2 270 aaPredicted RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 SYT14P1Q58G82 188 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 WBP2NLQ6ICG8 309 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 XKRXQ6PP77 449 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 CCDC80Q76M96 950 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 GCNT2Q8N0V5 402 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 BHLHE22Q8NFJ8 381 aaPredicted RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 VANGL1Q8TAA9 524 aaPredicted RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 SLC26A7Q8TE54 656 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 SLC25A43Q8WUT9 341 aaPredicted RBP11.2□□□□□ -0.62
SKA1-203ENST00000417656 ASB5Q8WWX0 329 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 WNT2BQ93097 391 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 SLC35B4Q969S0 331 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 DNAJA3Q96EY1 480 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 PSMG3-AS1Q96PY0 264 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 OR5B2Q96R09 309 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 UCN2Q96RP3 112 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 TM9SF2Q99805 663 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 ARHGDIGQ99819 225 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 WFDC6Q9BQY6 131 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 SRXN1Q9BYN0 137 aa11.2□□□□□ -0.62
SKA1-203ENST00000417656 OR11A1Q9GZK7 315 aa11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms