RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ARL5BQ96KC2 179 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 C1QTNF6Q9BXI9 259 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 POTEKPQ9BYX7 375 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 DPY30Q9C005 99 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 TRIM2Q9C040 744 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 ZNF350Q9GZX5 532 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 ACER3Q9NUN7 267 aa10.23□□□□□ -0.77
USP4-204ENST00000416417 FREM1Q5H8C1 2179 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 FBN1P35555 2871 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 NUP214P35658 2090 aaPredicted RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 SHISA9B4DS77 424 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 ETV2O00321 342 aaPredicted RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 AP3D1O14617 1153 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 KIAA0513O60268 411 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 SCN2BO60939 215 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 RAD51DO75771 328 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 PGCP20142 388 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 PGM1P36871 562 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 SERPINB5P36952 375 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 ZNF83P51522 516 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 CDH11P55287 796 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 ABCE1P61221 599 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 CHRNEQ04844 493 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 SYT14P1Q58G82 188 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 SPANXN4Q5MJ08 99 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 C9orf135Q5VTT2 229 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 HEPHL1Q6MZM0 1159 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 BHLHB9Q6PI77 547 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 TMPPEQ6ZT21 453 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 EIF3MQ7L2H7 374 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 ZNF563Q8TA94 476 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 AENQ8WTP8 325 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 CNOT9Q92600 299 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 TRMT61AQ96FX7 289 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 REG4Q9BYZ8 158 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 SLCO5A1Q9H2Y9 848 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 GP6Q9HCN6 339 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 NGBQ9NPG2 151 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 SERINC1Q9NRX5 453 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 CISD1Q9NZ45 108 aaKnown RBP10.22□□□□□ -0.77
USP4-204ENST00000416417 WDR45Q9Y484 360 aa10.22□□□□□ -0.77
USP4-204ENST00000416417 ANK3Q12955 4377 aaKnown RBP10.21□□□□□ -0.77
USP4-204ENST00000416417 JMJD1CQ15652 2540 aa10.21□□□□□ -0.77
USP4-204ENST00000416417 CSPG4Q6UVK1 2322 aa10.21□□□□□ -0.77
USP4-204ENST00000416417 DUXAA6NLW8 204 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 RNASET2O00584 256 aaKnown RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 ABCD4O14678 606 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 DNAJA2O60884 412 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 BGNP21810 368 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 OR2B6P58173 313 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 MAD2L1Q13257 205 aaPredicted RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 SYPL1Q16563 259 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 GPAT3Q53EU6 434 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 ABLIM2Q6H8Q1 611 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 EMBQ6PCB8 327 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 FRRS1Q6ZNA5 592 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 GALNT5Q7Z7M9 940 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 PIAS4Q8N2W9 510 aaPredicted RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 ZNF433Q8N7K0 673 aaPredicted RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 ANKFN1Q8N957 763 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.21□□□□□ -0.78
USP4-204ENST00000416417 ST8SIA1Q92185 356 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 ROPN1LQ96C74 230 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 TEX37Q96LM6 180 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 SORT1Q99523 831 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 TRAF4Q9BUZ4 470 aaPredicted RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 CCDC106Q9BWC9 280 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 NUF2Q9BZD4 464 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 ROPN1BQ9BZX4 212 aaPredicted RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 ROPN1Q9HAT0 212 aaPredicted RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 EXD2Q9NVH0 621 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 PNPOQ9NVS9 261 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 ASIC5Q9NY37 505 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 PCDHGB4Q9UN71 923 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 NOSIPQ9Y314 301 aaKnown RBP10.21□□□□□ -0.78
USP4-204ENST00000416417 TLN2Q9Y4G6 2542 aa10.21□□□□□ -0.78
USP4-204ENST00000416417 CCT8L1PA6NM43 557 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 ZNF716A6NP11 495 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 ZNF724A8MTY0 619 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 ANKRD28O15084 1053 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 SSX4O60224 188 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 CRLF1O75462 422 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 AK1P00568 194 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 SERPINE1P05121 402 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 GGT1P19440 569 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 COX5AP20674 150 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 UQCRC2P22695 453 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 IDUAP35475 653 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 CHI3L1P36222 383 aaPredicted RBP10.2□□□□□ -0.78
USP4-204ENST00000416417 IDH2P48735 452 aaKnown RBP10.2□□□□□ -0.78
USP4-204ENST00000416417 DMTNQ08495 405 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 MPP2Q14168 576 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 KRT71Q3SY84 523 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 ATAD3BQ5T9A4 648 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 SAXO2Q658L1 398 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 MTDHQ86UE4 582 aaKnown RBP10.2□□□□□ -0.78
USP4-204ENST00000416417 ADGRG3Q86Y34 549 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 FAM71CQ8NEG0 241 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 OR8J2Q8NGG1 315 aa10.2□□□□□ -0.78
USP4-204ENST00000416417 OR52E4Q8NGH9 312 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms