RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 TMEM239Q8WW34 195 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 PATE1Q8WXA2 126 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 ANKRD9Q96BM1 317 aaPredicted RBP13.65□□□□□ -0.22
USP4-203ENST00000415188 SAMD8Q96LT4 415 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 CD180Q99467 661 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 LMF2Q9BU23 707 aaKnown RBP13.65□□□□□ -0.22
USP4-203ENST00000415188 DPH1Q9BZG8 443 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 STRADBQ9C0K7 418 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 UBQLN3Q9H347 655 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 TMEM27Q9HBJ8 222 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 POLE4Q9NR33 117 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 INPP5EQ9NRR6 644 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 CARD8Q9Y2G2 431 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 GPR52Q9Y2T5 361 aa13.65□□□□□ -0.22
USP4-203ENST00000415188 UNC13CQ8NB66 2214 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 TEX51A0A1B0GUA7 166 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 NUDT21O43809 227 aaKnown RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 LDB3O75112 727 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 DNAJB6O75190 326 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 C1QL1O75973 258 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 PNLIPP16233 465 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CFL1P23528 166 aaKnown RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 HTR2AP28223 471 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CCKBRP32239 447 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 RBM34P42696 430 aaKnown RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 SEPHS1P49903 392 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 VSX2P58304 361 aaPredicted RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 ID2Q02363 134 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 ZNF155Q12901 538 aaPredicted RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 SLC13A2Q13183 592 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CLN3Q13286 438 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 ZNHIT3Q15649 155 aaPredicted RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 MAPK14Q16539 360 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 AMZ1Q400G9 498 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 FLYWCH1Q4VC44 716 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CCNJQ5T5M9 372 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 OR2G6Q5TZ20 316 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 GARNL3Q5VVW2 1013 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CXXC5Q7LFL8 322 aaKnown RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 C17orf82Q86X59 251 aaPredicted RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 MEX3DQ86XN8 651 aaKnown RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 LNX2Q8N448 690 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 ASB15Q8WXK1 588 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 TM9SF4Q92544 642 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 SDHCQ99643 169 aaPredicted RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 OR52D1Q9H346 318 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 SIDT1Q9NXL6 827 aaKnown RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 PISDQ9UG56 409 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CBLCQ9ULV8 474 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 POLHQ9Y253 713 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 CAB39Q9Y376 341 aaPredicted RBP13.64□□□□□ -0.23
USP4-203ENST00000415188 MED31Q9Y3C7 131 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 LOXL2Q9Y4K0 774 aa13.64□□□□□ -0.23
USP4-203ENST00000415188 WWP2O00308 870 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 RGS5O15539 181 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 HLA-DPB1P04440 258 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 IFI30P13284 250 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 RNH1P13489 461 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 BMP7P18075 431 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 DRD5P21918 477 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 GABRA3P34903 492 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 MLLT3P42568 568 aaPredicted RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 PSMD4P55036 377 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 UCNP55089 124 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 OR1D5P58170 312 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 RPS25P62851 125 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 ZFP36L1Q07352 338 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 DDI2Q5TDH0 399 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 C22orf42Q6IC83 251 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 PRSS41Q7RTY9 318 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 VWA5B2Q8N398 1253 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 ARHGEF39Q8N4T4 335 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 TMEM52Q8NDY8 209 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 GATAD2BQ8WXI9 593 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 C1GALT1C1Q96EU7 318 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 TRIM2Q9C040 744 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 KLHL25Q9H0H3 589 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 UCK1Q9HA47 277 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 HINT3Q9NQE9 182 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 WDR70Q9NW82 654 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 ERVK13-1Q9NX77 482 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 NPAP1Q9NZP6 1156 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 TNFRSF10DQ9UBN6 386 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 PAIP2BQ9ULR5 123 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 MRPS33Q9Y291 106 aaKnown RBP13.63□□□□□ -0.23
USP4-203ENST00000415188 SSUH2Q9Y2M2 353 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 GRIP1Q9Y3R0 1128 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 V9GYH0 126 aa13.63□□□□□ -0.23
USP4-203ENST00000415188 CENPVL1A0A0U1RR11 272 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 RHPN2P1A8MT19 583 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 J3QRE1 110 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 BHLHE40O14503 412 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 CDC42EP2O14613 210 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 SNPHO15079 494 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 CHP2O43745 196 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 OR10H2O60403 315 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 SRPX2O60687 465 aaPredicted RBP13.62□□□□□ -0.23
USP4-203ENST00000415188 HCN1O60741 890 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 CBX7O95931 251 aa13.62□□□□□ -0.23
USP4-203ENST00000415188 MSL3P1P0C860 447 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms