RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 TBC1D3GQ6DHY5 549 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 LINC00114Q6XXX2 140 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CREB3L2Q70SY1 520 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 RRM2BQ7LG56 351 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ZNF619Q8N2I2 560 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 BEST4Q8NFU0 473 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 OR51L1Q8NGJ5 315 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 RGP1Q92546 391 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 BADQ92934 168 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 WBP1Q96G27 269 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 KLHDC3Q9BQ90 382 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 HDHD2Q9H0R4 259 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ARHGEF9O43307 516 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ORC5O43913 435 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 HMGN1P05114 100 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 S1PR1P21453 382 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 INPP1P49441 399 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 SEC13P55735 322 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PER3P56645 1201 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 KLF9Q13886 244 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 PDGFRLQ15198 375 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 NTRK2Q16620 822 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 GSG1Q2KHT4 349 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 LGALSLQ3ZCW2 172 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 GXYLT1Q4G148 440 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 WDR45BQ5MNZ6 344 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ANKRD54Q6NXT1 300 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 MZT2AQ6P582 158 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 GET4Q7L5D6 327 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 GID4Q8IVV7 300 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PATE1Q8WXA2 126 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ACOT12Q8WYK0 555 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 HOXB13Q92826 284 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 PHF21AQ96BD5 680 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CTHRC1Q96CG8 243 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 SLC17A9Q9BYT1 436 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 LYARQ9NX58 379 aaKnown RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 CALML5Q9NZT1 146 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 A0A0B4J2E0 115 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 A0A1B0GX12 115 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 RPS10-NUDT3A0A1W2PQS6 291 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PLRG1O43660 514 aaKnown RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 GMDSO60547 372 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CBX7O95931 251 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CFDP00746 253 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 TCRBP04435 133 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 POU2F2P09086 479 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 EPXP11678 715 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PVRP15151 417 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 GIFP27352 417 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ATP6V1E1P36543 226 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PLA2G7Q13093 441 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 MAB21L1Q13394 359 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 RUNX3Q13761 415 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CSRP2Q16527 193 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 NDUFAF6Q330K2 333 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 OR4K14Q8NGD5 310 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 OR8H1Q8NGG4 311 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 GRHL3Q8TE85 626 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ANKRD9Q96BM1 317 aaPredicted RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 DERL3Q96Q80 235 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CD180Q99467 661 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 ADAP2Q9NPF8 381 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 UCKL1Q9NWZ5 548 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 CHRNA9Q9UGM1 479 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 FLVCR2Q9UPI3 526 aa9.09□□□□□ -0.95
SS18-203ENST00000415083 PCDHGA9Q9Y5G4 932 aaKnown RBP9.09□□□□□ -0.95
SS18-203ENST00000415083 SPTBP11277 2137 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 PRSS38A1L453 326 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 OGG1O15527 345 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 BRINP1O60477 761 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 MT-ND4P03905 459 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 HIST1H1CP16403 213 aaKnown RBP9.08□□□□□ -0.96
SS18-203ENST00000415083 NT5EP21589 574 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 DRD5P21918 477 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 SELENOPP49908 381 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 ANXA11P50995 505 aaKnown RBP9.08□□□□□ -0.96
SS18-203ENST00000415083 ADPRHP54922 357 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 CAMK2DQ13557 499 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 ZBTB37Q5TC79 503 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 FAM199XQ6PEV8 388 aaPredicted RBP9.08□□□□□ -0.96
SS18-203ENST00000415083 GJD3Q8N144 294 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 ARHGEF39Q8N4T4 335 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 ZMYND19Q96E35 227 aaPredicted RBP9.08□□□□□ -0.96
SS18-203ENST00000415083 CCDC120Q96HB5 630 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 ZNF559Q9BR84 538 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 IFT27Q9BW83 186 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 PHPT1Q9NRX4 125 aaPredicted RBP9.08□□□□□ -0.96
SS18-203ENST00000415083 DPP7Q9UHL4 492 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 NCKAP1Q9Y2A7 1128 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 TNFSF14O43557 240 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 ATP1B1P05026 303 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 PTHLHP12272 177 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 CMPK1P30085 196 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 NANOS3P60323 173 aaKnown RBP9.08□□□□□ -0.96
SS18-203ENST00000415083 TMEM31Q5JXX7 168 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 SLC25A38Q96DW6 304 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 PDCD1LG2Q9BQ51 273 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 FOLH1BQ9HBA9 442 aa9.08□□□□□ -0.96
SS18-203ENST00000415083 STARD5Q9NSY2 213 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms