RNA–Protein interactions for RNA: ENST00000413601.3

LIMS4-201, Transcript of LIM zinc finger domain containing 4, humanhuman

TSL 1 (best) BASIC

Gene LIMS4, Length 1,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS4-201ENST00000413601 SLC39A3Q9BRY0 314 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 POLDIP3Q9BY77 421 aaKnown RBP13.23□□□□□ -0.29
LIMS4-201ENST00000413601 ZNF385DQ9H6B1 395 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 PLSCR4Q9NRQ2 329 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 GLRX2Q9NS18 164 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 TRIM33Q9UPN9 1127 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 CREBBPQ92793 2442 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 CSMD2Q7Z408 3487 aa13.23□□□□□ -0.29
LIMS4-201ENST00000413601 TRBV5-3A0A0A0MS03 114 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 A0A0G2JPF8 293 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 A0A1W2PP18 115 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 FAM221AA4D161 298 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 SH3D21A4FU49 640 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 CDHR4A6H8M9 788 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 HNRNPCL2B2RXH8 293 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 HNRNPCL3B7ZW38 293 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 HNRNPCL1O60812 293 aaKnown RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 PABPC4LP0CB38 370 aaKnown RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 GKN3PP0CG01 181 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 HNRNPCL4P0DMR1 293 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 TFPIP10646 304 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 BMP2P12643 396 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 POU2F1P14859 743 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 CCNA2P20248 432 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 AGTR1P30556 359 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 RAC3P60763 192 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 SF3A3Q12874 501 aaKnown RBP eCLIP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 EXOC3L2Q2M3D2 409 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 SYT14P1Q58G82 188 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 GRINAQ7Z429 371 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 CDH24Q86UP0 819 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 ADGRG3Q86Y34 549 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 C10orf111Q8N326 155 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 DNAJA3Q96EY1 480 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 TMEM120AQ9BXJ8 343 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 CLEC4MQ9H2X3 399 aaPredicted RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 C12orf49Q9H741 205 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 A4GALTQ9NPC4 353 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 RASSF1Q9NS23 344 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 FGFR1OP2Q9NVK5 253 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 ELOVL5Q9NYP7 299 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 NIPSNAP3AQ9UFN0 247 aaPredicted RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 CHRNA9Q9UGM1 479 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 NDRG3Q9UGV2 375 aa13.22□□□□□ -0.29
LIMS4-201ENST00000413601 ZNF443Q9Y2A4 671 aaPredicted RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 ANKHD1Q8IWZ3 2542 aaKnown RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 ANKRD17O75179 2603 aaKnown RBP13.22□□□□□ -0.29
LIMS4-201ENST00000413601 TACC2O95359 2948 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 CFAP73A6NFT4 308 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 PRKD3O94806 890 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 KLK2P20151 261 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 PPIBP23284 216 aaKnown RBP13.21□□□□□ -0.29
LIMS4-201ENST00000413601 UGT2B10P36537 528 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 DIO1P49895 249 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 GUCY1A3Q02108 690 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 EPS8Q12929 822 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 LARS2Q15031 903 aaKnown RBP13.21□□□□□ -0.29
LIMS4-201ENST00000413601 RNPS1Q15287 305 aaKnown RBP13.21□□□□□ -0.29
LIMS4-201ENST00000413601 LIN52Q52LA3 116 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 HSP90B2PQ58FF3 399 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 DLEU7Q6UYE1 221 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 LURAP1LQ8IV03 231 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 TUSC5Q8IXB3 177 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 CLIP4Q8N3C7 705 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 SLC25A43Q8WUT9 341 aaPredicted RBP13.21□□□□□ -0.29
LIMS4-201ENST00000413601 ARL5BQ96KC2 179 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 DACH2Q96NX9 599 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 WFIKKN1Q96NZ8 548 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 OR11A1Q9GZK7 315 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 IKZF5Q9H5V7 419 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 LEF1Q9UJU2 399 aaPredicted RBP13.21□□□□□ -0.29
LIMS4-201ENST00000413601 ITGB1BP2Q9UKP3 347 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 ZNF232Q9UNY5 417 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 CHST2Q9Y4C5 530 aa13.21□□□□□ -0.29
LIMS4-201ENST00000413601 SPIN1Q9Y657 262 aaPredicted RBP13.21□□□□□ -0.29
LIMS4-201ENST00000413601 TMED7-TICAM2A0A0A6YYA0 188 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 ENO4A6NNW6 628 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 C5orf58C9J3I9 102 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 C16orf97H3BN30 126 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 SULT2B1O00204 365 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 FAAHO00519 579 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 SMAD9O15198 467 aaKnown RBP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 THBS1P07996 1170 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 VIMP08670 466 aaKnown RBP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 TROVE2P10155 538 aaKnown RBP eCLIP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 ARAFP10398 606 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 UQCRBP14927 111 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 TACR3P29371 465 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 CCKARP32238 428 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 ACAA2P42765 397 aaKnown RBP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 HTR3AP46098 478 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 PCYT1AP49585 367 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 POLR2HP52434 150 aaKnown RBP13.2□□□□□ -0.3
LIMS4-201ENST00000413601 ZNF311Q5JNZ3 666 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 TMEM201Q5SNT2 666 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 GCNT6Q5T4J0 391 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 RNF220Q5VTB9 566 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 PRAMEF8Q5VWM4 474 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 PRAMEF7Q5VXH5 474 aa13.2□□□□□ -0.3
LIMS4-201ENST00000413601 METTL21CQ5VZV1 264 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms