RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 DUSP22Q9NRW4 184 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 SLC6A14Q9UN76 642 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 PLCL2Q9UPR0 1127 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 CHRNB1P11230 501 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 HOXB3P14651 431 aaPredicted RBP17.2■□□□□ 0.34
USP48-204ENST00000400301 SOX18P35713 384 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 SCGB2B2Q4G0G5 96 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 ZMAT1Q5H9K5 638 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 SLC22A10Q63ZE4 541 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 OR5AK2Q8NH90 309 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 ABHD4Q8TB40 342 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 MUTYHQ9UIF7 546 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 CDC40O60508 579 aaKnown RBP eCLIP17.2■□□□□ 0.34
USP48-204ENST00000400301 ART1P52961 327 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 FABP5Q01469 135 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 CD300CQ08708 224 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 SSX1Q16384 188 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 TPRA1Q86W33 373 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 OR13H1Q8NG92 308 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 OR2AJ1Q8NGZ0 328 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 IFT46Q9NQC8 304 aa17.2■□□□□ 0.34
USP48-204ENST00000400301 TRIM64A6NGJ6 449 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 KIAA1024LP59773 190 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 ARHGAP11BQ3KRB8 267 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 C1orf53Q5VUE5 145 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 ZNF784Q8NCA9 323 aaPredicted RBP17.19■□□□□ 0.34
USP48-204ENST00000400301 SLC37A2Q8TED4 501 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 COX14Q96I36 57 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 ORAI3Q9BRQ5 295 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 CD207Q9UJ71 328 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 FFAR1O14842 300 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 PNMTP11086 282 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 SNRPBP14678 240 aaKnown RBP17.19■□□□□ 0.34
USP48-204ENST00000400301 FBLP22087 321 aaKnown RBP17.19■□□□□ 0.34
USP48-204ENST00000400301 DRD3P35462 400 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 MTNR1BP49286 362 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 NR0B1P51843 470 aaKnown RBP17.19■□□□□ 0.34
USP48-204ENST00000400301 TPBGQ13641 420 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 MLC1Q15049 377 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 THRSPQ92748 146 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 PPIL3Q9H2H8 161 aaKnown RBP17.19■□□□□ 0.34
USP48-204ENST00000400301 SERINC1Q9NRX5 453 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 ALG5Q9Y673 324 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 DSCR3O14972 297 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 SPNP16150 400 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 S1PR1P21453 382 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 TMEM196Q5HYL7 178 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 SFXN4Q6P4A7 337 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 LRRN1Q6UXK5 716 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 CCDC190Q86UF4 302 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 KCTD12Q96CX2 325 aaKnown RBP17.19■□□□□ 0.34
USP48-204ENST00000400301 SLC17A4Q9Y2C5 497 aa17.19■□□□□ 0.34
USP48-204ENST00000400301 FBXO45P0C2W1 286 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 UBL4AP11441 157 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 GIFP27352 417 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 MAZP56270 477 aaKnown RBP17.18■□□□□ 0.34
USP48-204ENST00000400301 SF3B4Q15427 424 aaKnown RBP eCLIP17.18■□□□□ 0.344e-7■■■■■ 28.1
USP48-204ENST00000400301 LRFN4Q6PJG9 635 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 TMEM99Q8N816 258 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 GAS2L1Q99501 681 aaPredicted RBP17.18■□□□□ 0.34
USP48-204ENST00000400301 MED11Q9P086 117 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 FZD7O75084 574 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 HBQ1P09105 142 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 SLC35E2P0CK97 266 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 GTF2F2P13984 249 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 BAK1Q16611 211 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 CCDC107Q8WV48 283 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 TEAD3Q99594 435 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 SDHAF3Q9NRP4 125 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 NPAP1Q9NZP6 1156 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 KLHL9Q9P2J3 617 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 ZNF337Q9Y3M9 751 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 TLX3O43711 291 aaPredicted RBP17.18■□□□□ 0.34
USP48-204ENST00000400301 RUNX2Q13950 521 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 GLT8D1Q68CQ7 371 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 TMEM234Q8WY98 164 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 KIAA1143Q96AT1 154 aaPredicted RBP17.18■□□□□ 0.34
USP48-204ENST00000400301 JSRP1Q96MG2 331 aaPredicted RBP17.18■□□□□ 0.34
USP48-204ENST00000400301 PSD2Q9BQI7 771 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 MGAT4AQ9UM21 535 aa17.18■□□□□ 0.34
USP48-204ENST00000400301 EXO1Q9UQ84 846 aaKnown RBP17.18■□□□□ 0.34
USP48-204ENST00000400301 M0R233 179 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 SMAD9O15198 467 aaKnown RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 THBS1P07996 1170 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 TPMTP51580 245 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 HNRNPKP61978 463 aaKnown RBP eCLIP17.17■□□□□ 0.34
USP48-204ENST00000400301 MLF2Q15773 248 aaPredicted RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 GXYLT1Q4G148 440 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 TMEM184AQ6ZMB5 413 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 QSOX2Q6ZRP7 698 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 FGF14Q92915 247 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 FN3KQ9H479 309 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 LYRM4Q9HD34 91 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 MGAT4CQ9UBM8 478 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 CKAP5Q14008 2032 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 PCM1Q15154 2024 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 CENPBD1B2RD01 187 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 ARRB1P49407 418 aaPredicted RBP17.17■□□□□ 0.34
USP48-204ENST00000400301 DEFB133Q30KQ1 61 aa17.17■□□□□ 0.34
USP48-204ENST00000400301 MAMDC2Q7Z304 686 aaPredicted RBP17.17■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms