RNA–Protein interactions for RNA: ENST00000376646.3

VPS13A-206, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 5 BASIC

Gene VPS13A, Length 2,262 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-206ENST00000376646 CNPY4Q8N129 248 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZCCHC7Q8N3Z6 543 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF525Q8N782 197 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PAQR8Q8TEZ7 354 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 PSKH2Q96QS6 385 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 KIR2DL4Q99706 377 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 CCT7Q99832 543 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 GON7Q9BXV9 100 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 NT5C3AQ9H0P0 336 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 RHBGQ9H310 441 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 Q9H3A6 140 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 APMAPQ9HDC9 416 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 B3GNT2Q9NY97 397 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 WARS2Q9UGM6 360 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 APOBEC3BQ9UH17 382 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 KLHL21Q9UJP4 597 aa1.5□□□□□ -2.17
VPS13A-206ENST00000376646 AK6Q9Y3D8 172 aaKnown RBP1.5□□□□□ -2.17
VPS13A-206ENST00000376646 WWP2O00308 870 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 UGT2B17O75795 530 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 IL1BP01584 269 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 STSP08842 583 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 P0C879 139 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 NCK1P16333 377 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 HMGB2P26583 209 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 FGF9P31371 208 aaPredicted RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 RDXP35241 583 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 SLC10A7Q0GE19 358 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 C1orf61Q13536 156 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ELAVL3Q14576 367 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 OR2B11Q5JQS5 317 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 C9orf129Q5T035 196 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 CCDC137Q6PK04 289 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 FRA10AC1Q70Z53 315 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 MOB1BQ7L9L4 216 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF679Q8IYX0 411 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 DHRSXQ8N5I4 330 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 EIF1ADQ8N9N8 165 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 CATSPER1Q8NEC5 780 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 OR4D9Q8NGE8 314 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF606Q8WXB4 792 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 FAF2Q96CS3 445 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 IL4I1Q96RQ9 567 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 NPAS2Q99743 824 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TMEM43Q9BTV4 400 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 RNF126Q9BV68 326 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 C19orf24Q9BVV8 132 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 NAT10Q9H0A0 1025 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 MAGT1Q9H0U3 335 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 LRRN3Q9H3W5 708 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 UFSP2Q9NUQ7 469 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 UBQLN1Q9UMX0 589 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ERVW-1Q9UQF0 538 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 RASD1Q9Y272 281 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 PLLPQ9Y342 182 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 SLCO1B1Q9Y6L6 691 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TRAV26-1A0A087WT03 109 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 A0A1B0GWB2 263 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TUBAL3A6NHL2 446 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 E7ESA3 106 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TAPBPO15533 448 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 OR10H3O60404 316 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 HCN1O60741 890 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 SURF6O75683 361 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 IGLL1P15814 213 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ELK1P19419 428 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 GCAP28676 217 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 LEPP41159 167 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 KIR2DS2P43631 304 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 CASP4P49662 377 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 DAP3P51398 398 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 P2RY4P51582 365 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 DIO3P55073 304 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 RIPK1Q13546 671 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 MESDQ14696 234 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 GANABQ14697 944 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 KIAA0040Q15053 153 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 PDK3Q15120 406 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 AANATQ16613 207 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 LRRC36Q1X8D7 754 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 EXOC3L2Q2M3D2 409 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 OLFML2AQ68BL7 652 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 IGFL2Q6UWQ7 119 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 PP632Q6XCG6 107 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 OR10H4Q8NGA5 316 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 OR5D13Q8NGL4 314 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TCTEX1D2Q8WW35 142 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 MAIP1Q8WWC4 291 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 RAPGEF5Q92565 580 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 SECISBP2Q96T21 854 aaKnown RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF670Q9BS34 389 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 TUBGCP2Q9BSJ2 902 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 CAPS2Q9BXY5 557 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 ZNF702PQ9H963 129 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 LRRC40Q9H9A6 602 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 POPDC2Q9HBU9 364 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 SMOXQ9NWM0 555 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 VNN3Q9NY84 501 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 C6orf203Q9P0P8 240 aaPredicted RBP1.49□□□□□ -2.17
VPS13A-206ENST00000376646 EXTL2Q9UBQ6 330 aa1.49□□□□□ -2.17
VPS13A-206ENST00000376646 CA5BQ9Y2D0 317 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms