RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PADI1Q9ULC6 663 aa13.18□□□□□ -0.3
HMGA1-203ENST00000374116 SRPK3Q9UPE1 567 aa13.18□□□□□ -0.3
HMGA1-203ENST00000374116 URB1O60287 2271 aaKnown RBP13.18□□□□□ -0.3
HMGA1-203ENST00000374116 GIMAP1-GIMAP5A0A087WTJ2 511 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 URADA6NGE7 173 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 LEUTXA8MZ59 168 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 H3BN98 237 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 NOS1APO75052 506 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-203ENST00000374116 TMCC2O75069 709 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 EPPINO95925 133 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 C1QBP02746 253 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 IL32P24001 234 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 MC3RP41968 323 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 DCDP81605 110 aaKnown RBP13.17□□□□□ -0.3
HMGA1-203ENST00000374116 EFR3AQ14156 821 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 VWA2Q5GFL6 755 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 MEDAGQ5VYS4 303 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 FAM122CQ6P4D5 195 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 CASP12Q6UXS9 341 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 HDDC2Q7Z4H3 204 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 DTX1Q86Y01 620 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 OR9A2Q8NGT5 310 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 CT55Q8WUE5 264 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 GIMAP5Q96F15 307 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 OTUB1Q96FW1 271 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-203ENST00000374116 NEDD4LQ96PU5 975 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 TRNT1Q96Q11 434 aaKnown RBP13.17□□□□□ -0.3
HMGA1-203ENST00000374116 ACTRT3Q9BYD9 372 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 NARFLQ9H6Q4 476 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 LIN7BQ9HAP6 207 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 RABL2AQ9UBK7 228 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-203ENST00000374116 FBXO9Q9UK97 447 aaPredicted RBP13.17□□□□□ -0.3
HMGA1-203ENST00000374116 DAPP1Q9UN19 280 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 RAXQ9Y2V3 346 aa13.17□□□□□ -0.3
HMGA1-203ENST00000374116 LINC00862A6NCI5 91 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 TRIM77I1YAP6 450 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 CDC123O75794 336 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 PTHP01270 115 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 CCNYL3P0C7X3 344 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 PTGER1P34995 402 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 EIF2S3P41091 472 aaKnown RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 TIMM50Q3ZCQ8 353 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 NKAIN1Q4KMZ8 207 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ARMCX4Q5H9R4 360 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ARMC4Q5T2S8 1044 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ARHGAP40Q5TG30 622 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 FAM205BPQ63HN1 556 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 COX15Q7KZN9 410 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ABHD13Q7L211 337 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 VWA5B2Q8N398 1253 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 OR6T1Q8NGN1 323 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 OR8J1Q8NGP2 316 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 TMEM80Q96HE8 168 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 SLC22A4Q9H015 551 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 TRIM45Q9H8W5 580 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ZNF304Q9HCX3 659 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 RANGRFQ9HD47 186 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 MAN2C1Q9NTJ4 1040 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 IL17BQ9UHF5 180 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 SLC22A7Q9Y694 548 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 DUXAA6NLW8 204 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 KLK10O43240 276 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 GALR3O60755 368 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ENTPD6O75354 484 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 SOX14O95416 240 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 AGR2O95994 175 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 HBQ1P09105 142 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 LIPCP11150 499 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 GSTM3P21266 225 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ZNF10P21506 573 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 CPN2P22792 545 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 GRK5P34947 590 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 SOX18P35713 384 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 DLSTP36957 453 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 RGS6P49758 472 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 CLN3Q13286 438 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 FAM53BQ14153 422 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 OCLNQ16625 522 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ZNF311Q5JNZ3 666 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 GARNL3Q5VVW2 1013 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 C1orf94Q6P1W5 598 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 OLIG3Q7RTU3 272 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 KCTD20Q7Z5Y7 419 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 LRRC25Q8N386 305 aaPredicted RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 OR4K5Q8NGD3 323 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 CITED4Q96RK1 184 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 IL4I1Q96RQ9 567 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ARHGDIGQ99819 225 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 MESP1Q9BRJ9 268 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 SLC38A1Q9H2H9 487 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 LYRM4Q9HD34 91 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 TNFRSF10DQ9UBN6 386 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 SLC13A4Q9UKG4 626 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 RPL36Q9Y3U8 105 aaKnown RBP13.16□□□□□ -0.3
HMGA1-203ENST00000374116 KCNE3Q9Y6H6 103 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 V9GYH0 126 aa13.16□□□□□ -0.3
HMGA1-203ENST00000374116 ZZEF1O43149 2961 aa13.15□□□□□ -0.3
HMGA1-203ENST00000374116 A8MV72 311 aaPredicted RBP13.15□□□□□ -0.3
HMGA1-203ENST00000374116 B3GALT2O43825 422 aa13.15□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms