RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 ZNF346Q9UL40 294 aaKnown RBP9.53□□□□□ -0.88
LIMA1-201ENST00000341247 EXOGQ9Y2C4 368 aaKnown RBP9.53□□□□□ -0.88
LIMA1-201ENST00000341247 IER3IP1Q9Y5U9 82 aa9.53□□□□□ -0.88
LIMA1-201ENST00000341247 RNF13O43567 381 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CTBP2P56545 445 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 RNASE12Q5GAN4 147 aaKnown RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 GARNL3Q5VVW2 1013 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 TTLL10Q6ZVT0 673 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CLDN22Q8N7P3 220 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 OR51Q1Q8NH59 317 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 KISS1RQ969F8 398 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 TMCO6Q96DC7 493 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 ABHD8Q96I13 439 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 OR8D2Q9GZM6 311 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 Q9N2J8 555 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 MED17Q9NVC6 651 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 BABAM2Q9NXR7 383 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 MPDZO75970 2070 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 TRDV1A0A1B0GX56 115 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 GTPBP1O00178 669 aaKnown RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CLDN4O14493 209 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 HCN1O60741 890 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 SOX30O94993 753 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 IGHA1P01876 353 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 HIST1H1CP16403 213 aaKnown RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 DRD5P21918 477 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 MAP3K8P41279 467 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 ZNF362Q5T0B9 420 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 NR2C2APQ86WQ0 139 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 GID4Q8IVV7 300 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 OR5W2Q8NH69 310 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 SMPDL3BQ92485 455 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 SENP5Q96HI0 755 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 VSTM2LQ96N03 204 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 GAL3ST4Q96RP7 486 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 ORAI3Q9BRQ5 295 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 OR10A5Q9H207 317 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 MCCC2Q9HCC0 563 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CMC2Q9NRP2 79 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 DDX28Q9NUL7 540 aaKnown RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 UCKL1Q9NWZ5 548 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 MRPS33Q9Y291 106 aaKnown RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 LOC400499M0QZD8 3231 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 FAM221BA6H8Z2 402 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 MCIDASD6RGH6 385 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CHP2O43745 196 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CT45A8P0DMV1 189 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CT45A9P0DMV2 189 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 ZNF3P17036 446 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 SDHBP21912 280 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CCR5P51681 352 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 SCN1BQ07699 218 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 GLYR1Q49A26 553 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 CT45A2Q5DJT8 189 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 ZNF517Q6ZMY9 492 aaPredicted RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 RNF113BQ8IZP6 322 aaKnown RBP9.52□□□□□ -0.89
LIMA1-201ENST00000341247 ARIH2OSQ8N7S6 290 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 OR6K6Q8NGW6 343 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 OR5J2Q8NH18 312 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 UBASH3BQ8TF42 649 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 KLHDC3Q9BQ90 382 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 RNF32Q9H0A6 362 aa9.52□□□□□ -0.89
LIMA1-201ENST00000341247 IGHV1OR15-9A0A0B4J2B8 117 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 BLOC1S5-TXNDC5H3BN57 136 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 H3BSH0 61 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 HPGDP15428 266 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CSNK1EP49674 416 aaKnown RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 RAB25P57735 213 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 COPZ1P61923 177 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 PRTGQ2VWP7 1150 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 MANEAQ5SRI9 462 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 OTPQ5XKR4 325 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ZCCHC12Q6PEW1 402 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 TMPRSS11FQ6ZWK6 438 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 BCORP1Q8N888 145 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 TOR1AIP2Q8NFQ8 470 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ZPLD1Q8TCW7 415 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CAPSLQ8WWF8 208 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 TSLPQ969D9 159 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ORAI1Q96D31 301 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 NMNAT3Q96T66 252 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 TIMP4Q99727 224 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ATF6BQ99941 703 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 A0A1B0GVT2 93 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 C17orf105B2RV13 164 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 POLR1CO15160 346 aaPredicted RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CTNSO60931 367 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 PAHP00439 452 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 AK1P00568 194 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 SLC2A2P11168 524 aaPredicted RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CD38P28907 300 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 CAPZBP47756 277 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ERVK-25P63136 954 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 KRR1Q13601 381 aaKnown RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 EXOSC6Q5RKV6 272 aaKnown RBP9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ZNF613Q6PF04 617 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 Q8N402 240 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 OR52N1Q8NH53 320 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 PHOSPHO1Q8TCT1 267 aa9.51□□□□□ -0.89
LIMA1-201ENST00000341247 ZNRF4Q8WWF5 429 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms