RNA–Protein interactions for RNA: ENST00000307662.4

SYNPO-201, Transcript of synaptopodin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SYNPO, Length 5,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-201ENST00000307662 A0A0U1RQK1 487 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 TOR1AO14656 332 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF888P0CJ79 500 aaPredicted RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 UBL4AP11441 157 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 DAP3P51398 398 aaKnown RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 CLDN6P56747 220 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 CAMK2DQ13557 499 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 MRPL10Q7Z7H8 261 aaKnown RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ACOT4Q8N9L9 421 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 OR5L2Q8NGL0 311 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ZFYVE21Q9BQ24 234 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 RAB19A4D1S5 217 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 FBXO24O75426 580 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 MT-CO2P00403 227 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 SERPINE2P07093 398 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ARRB1P49407 418 aaPredicted RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 HTD2P86397 168 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ILKQ13418 452 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ARRDC2Q8TBH0 407 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 NICN1Q9BSH3 213 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 KLHL13Q9P2N7 655 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF337Q9Y3M9 751 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 TRIM64BA6NI03 449 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 A6NL46 340 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 DPM1O60762 260 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 LILRB5O75023 590 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 CNMDO75829 334 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 LALBAP00709 142 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 S100A11P31949 105 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 RPL23AP62750 156 aaKnown RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 PSPHP78330 225 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 HENMT1Q5T8I9 393 aaKnown RBP16.24■□□□□ 0.19
SYNPO-201ENST00000307662 KCTD11Q693B1 232 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 ZFAND1Q8TCF1 268 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 SPTSSAQ969W0 71 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 SEMA4GQ9NTN9 838 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 KIF25Q9UIL4 384 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 NAV1Q8NEY1 1877 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 TIAM2Q8IVF5 1701 aa16.24■□□□□ 0.19
SYNPO-201ENST00000307662 HNRNPKP61978 463 aaKnown RBP eCLIP16.23■□□□□ 0.19
SYNPO-201ENST00000307662 RCBTB1Q8NDN9 531 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 TRMT2BQ96GJ1 504 aaKnown RBP16.23■□□□□ 0.19
SYNPO-201ENST00000307662 PKMYT1Q99640 499 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 hCG_1807616A0A1W2PRN6 198 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 LATO43561 262 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 CFIP05156 583 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF43P17038 809 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 PPT1P50897 306 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 OR1Q1Q15612 314 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 SLC51BQ86UW2 128 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 SIAH3Q8IW03 269 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 ASB11Q8WXH4 323 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 KHSRPQ92945 711 aaKnown RBP eCLIP16.23■□□□□ 0.19
SYNPO-201ENST00000307662 MYH13Q9UKX3 1938 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 HOXB5P09067 269 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 ATXN1LP0C7T5 689 aaKnown RBP16.23■□□□□ 0.19
SYNPO-201ENST00000307662 SQSTM1Q13501 440 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 INAVAQ3KP66 663 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 RTL6Q6ICC9 239 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 TANKQ92844 425 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 ACKR4Q9NPB9 350 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 NRIP3Q9NQ35 241 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 CA5BQ9Y2D0 317 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 TMPPEQ6ZT21 453 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 RNF175Q8N4F7 328 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 LGALS14Q8TCE9 139 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 SGCZQ96LD1 299 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 SORCS2Q96PQ0 1159 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 A0A0B4J2A0 478 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 VEGFCP49767 419 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 EEF1A1P5Q5VTE0 462 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 CD276Q5ZPR3 534 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF681Q96N22 645 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 SHPKQ9UHJ6 478 aa16.23■□□□□ 0.19
SYNPO-201ENST00000307662 KLF8O95600 359 aaPredicted RBP16.22■□□□□ 0.19
SYNPO-201ENST00000307662 AOAHP28039 575 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 DHPSP49366 369 aaPredicted RBP16.22■□□□□ 0.19
SYNPO-201ENST00000307662 POLR2HP52434 150 aaKnown RBP16.22■□□□□ 0.19
SYNPO-201ENST00000307662 IDO2Q6ZQW0 420 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 MRPL41Q8IXM3 137 aaKnown RBP16.22■□□□□ 0.19
SYNPO-201ENST00000307662 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 MBLAC1A4D2B0 266 aaPredicted RBP16.22■□□□□ 0.19
SYNPO-201ENST00000307662 MEIS3P2A8K0S8 358 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 TNFSF12O43508 249 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 C1QBP02746 253 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 SHC1P29353 583 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 UBE2KP61086 200 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 PLA2G7Q13093 441 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 TNK1Q13470 666 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 NFATC4Q14934 902 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 SBSNQ6UWP8 590 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 FUNDC1Q8IVP5 155 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 NMNAT2Q9BZQ4 307 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 ZNF160Q9HCG1 818 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 SNX11Q9Y5W9 270 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 DOT1LQ8TEK3 1739 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 CIB4A0PJX0 185 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 A6NLC8 198 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 KCNK5O95279 499 aa16.22■□□□□ 0.19
SYNPO-201ENST00000307662 PTBP1P26599 531 aaKnown RBP eCLIP16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms