RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 SRD5A1P18405 259 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 PGCP20142 388 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 HNF1AP20823 631 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 EFNA1P20827 205 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 CRHR1P34998 444 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 DIO1P49895 249 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF83P51522 516 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 GALNTL6Q49A17 601 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 ABLIM2Q6H8Q1 611 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF525Q8N782 197 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 OR2T11Q8NH01 316 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 PIGXQ8TBF5 258 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF775Q96BV0 537 aaPredicted RBP13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 INPP5KQ9BT40 448 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 ANKZF1Q9H8Y5 726 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 GPATCH2Q9NW75 528 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 TBK1Q9UHD2 729 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 NOSIPQ9Y314 301 aaKnown RBP13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 SLC25A15Q9Y619 301 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 SVEP1Q4LDE5 3571 aa13.01□□□□□ -0.33
CCDC88B-201ENST00000301897 SERINC4A6NH21 518 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 DUXAA6NLW8 204 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 HAX1O00165 279 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 ANKRD28O15084 1053 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 LYPLA1O75608 230 aaPredicted RBP13□□□□□ -0.33
CCDC88B-201ENST00000301897 H6PDO95479 791 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 IGHV4-31P0DP07 118 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 PTNP21246 168 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 LSM11P83369 360 aaKnown RBP eCLIP13□□□□□ -0.33
CCDC88B-201ENST00000301897 CHRNEQ04844 493 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 MERTKQ12866 999 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 KRTAP24-1Q3LI83 254 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 SYT14P1Q58G82 188 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 KANK2Q63ZY3 851 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 FAM166AQ6J272 317 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 DDIASQ8IXT1 998 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 OR52N5Q8NH56 324 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 OIT3Q8WWZ8 545 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 PPP3R2Q96LZ3 170 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 C16orf45Q96MC5 204 aaPredicted RBP13□□□□□ -0.33
CCDC88B-201ENST00000301897 TUBB1Q9H4B7 451 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 MANSC1Q9H8J5 431 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 ACER3Q9NUN7 267 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 MALT1Q9UDY8 824 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 KCNS2Q9ULS6 477 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 FIS1Q9Y3D6 152 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 DNAJC15Q9Y5T4 150 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 ARFGEF3Q5TH69 2177 aa13□□□□□ -0.33
CCDC88B-201ENST00000301897 ESPNB1AK53 854 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 NDUFS8O00217 210 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 MRPL33O75394 65 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 PMS2P2O95744 297 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 LAMP1P11279 417 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF16P17020 682 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 EDNRAP25101 427 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 APOBEC1P41238 236 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 CLK1P49759 484 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 RNF144AP50876 292 aaPredicted RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 SESN3P58005 492 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 TGFBR3Q03167 851 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 SKP2Q13309 424 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF141Q15928 474 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 NDUFAF6Q330K2 333 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 PDZK1Q5T2W1 519 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 EIF3MQ7L2H7 374 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 IFT20Q8IY31 132 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 C17orf78Q8N4C9 275 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 OR7A2PQ8NGA2 310 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 MUS81Q96NY9 551 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 SDF2Q99470 211 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 THUMPD3Q9BV44 507 aaKnown RBP12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 C19orf24Q9BVV8 132 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 TXLNGYQ9BZA5 131 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 PPCSQ9HAB8 311 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 PARPBPQ9NWS1 579 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 DCTN4Q9UJW0 460 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 HDGFL3Q9Y3E1 203 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 FKBP7Q9Y680 259 aa12.99□□□□□ -0.33
CCDC88B-201ENST00000301897 M0R1B8 84 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 COPEO14579 308 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 STX11O75558 287 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 CSTAP01040 98 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 FGF4P08620 206 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 TFPIP10646 304 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 APOBEC3AP31941 199 aaPredicted RBP12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 MAGEA8P43361 318 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 PDLIM4P50479 330 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 SLC16A1P53985 500 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 C1orf162Q8NEQ5 155 aaPredicted RBP12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 OR7D2Q96RA2 312 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 QRSL1Q9H0R6 528 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 EML4Q9HC35 981 aaKnown RBP12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 CHRNA9Q9UGM1 479 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 AMDHD2Q9Y303 409 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 ATP23Q9Y6H3 246 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 KCNE3Q9Y6H6 103 aa12.98□□□□□ -0.33
CCDC88B-201ENST00000301897 ZNF716A6NP11 495 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 CFLARO15519 480 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 TRIM13O60858 407 aa12.97□□□□□ -0.33
CCDC88B-201ENST00000301897 CYP7B1O75881 506 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 78.6 ms