RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ELP4Q96EB1 424 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 TAPBPLQ9BX59 468 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 CXorf36Q9H7Y0 433 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 MTHFD2LQ9H903 347 aaPredicted RBP14.34□□□□□ -0.11
SHH-201ENST00000297261 NAALAD2Q9Y3Q0 740 aa14.34□□□□□ -0.11
SHH-201ENST00000297261 CIB4A0PJX0 185 aa14.33□□□□□ -0.11
SHH-201ENST00000297261 IL12BP29460 328 aa14.33□□□□□ -0.11
SHH-201ENST00000297261 EXOSC2Q13868 293 aaKnown RBP14.33□□□□□ -0.11
SHH-201ENST00000297261 SLC22A18Q96BI1 424 aa14.33□□□□□ -0.11
SHH-201ENST00000297261 KCTD12Q96CX2 325 aaKnown RBP14.33□□□□□ -0.11
SHH-201ENST00000297261 METTL2AQ96IZ6 378 aaKnown RBP14.33□□□□□ -0.11
SHH-201ENST00000297261 SLC17A9Q9BYT1 436 aa14.33□□□□□ -0.11
SHH-201ENST00000297261 TMEM184CQ9NVA4 438 aa14.33□□□□□ -0.11
SHH-201ENST00000297261 CDC123O75794 336 aaPredicted RBP14.33□□□□□ -0.12
SHH-201ENST00000297261 ITGA5P08648 1049 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 DUSP6Q16828 381 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 FAM109BQ6ICB4 259 aaPredicted RBP14.33□□□□□ -0.12
SHH-201ENST00000297261 TSTD1Q8NFU3 115 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TMEM239Q8WW34 195 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 SEC22AQ96IW7 307 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 NECAB3Q96P71 396 aaPredicted RBP14.33□□□□□ -0.12
SHH-201ENST00000297261 LYSMD1Q96S90 227 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TMEM43Q9BTV4 400 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TBL1XR1Q9BZK7 514 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 RPS10P5Q9NQ39 176 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 ABRACLQ9P1F3 81 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 hCG_1807616A0A1W2PRN6 198 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 DCDC2BA2VCK2 349 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 UBL3O95164 117 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 ZNF35P13682 527 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 PCMT1P22061 227 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 MMP11P24347 488 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 PRLHRP49683 370 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 RHEBQ15382 184 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 CD276Q5ZPR3 534 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TMPRSS9Q7Z410 1059 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 SPRED2Q7Z698 418 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 C12orf40Q86WS4 652 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 LRRC25Q8N386 305 aaPredicted RBP14.33□□□□□ -0.12
SHH-201ENST00000297261 LILRA3Q8N6C8 439 aaPredicted RBP14.33□□□□□ -0.12
SHH-201ENST00000297261 NAXEQ8NCW5 288 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 LGALS14Q8TCE9 139 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 ZNF649Q9BS31 505 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 PINK1Q9BXM7 581 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 GABARAPL3Q9BY60 117 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 V9GY05 133 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TRAV27A0A087WT01 109 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TCRBV21S2A2A0A5A6 115 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 HCKP08631 526 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 UGT2B7P16662 529 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 IL1RNP18510 177 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 S100A11P31949 105 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 TSPAN31Q12999 210 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 ABHD13Q7L211 337 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 ESX1Q8N693 406 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 OR7G2Q8NG99 324 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 OR6T1Q8NGN1 323 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 OR9A2Q8NGT5 310 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 OR5AK2Q8NH90 309 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 GABARAPL1Q9H0R8 117 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 PRSS16Q9NQE7 514 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 SLC23A1Q9UHI7 598 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 DHDHQ9UQ10 334 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 IER3IP1Q9Y5U9 82 aa14.33□□□□□ -0.12
SHH-201ENST00000297261 CHP2O43745 196 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 S100GP29377 79 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 P2RY2P41231 377 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 SLC14A1Q13336 389 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 CLPPQ16740 277 aaPredicted RBP14.32□□□□□ -0.12
SHH-201ENST00000297261 AMZ1Q400G9 498 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 GGTA1PQ4G0N0 100 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 MEPCEQ7L2J0 689 aaKnown RBP14.32□□□□□ -0.12
SHH-201ENST00000297261 DCUN1D4Q92564 292 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 GPR89AB7ZAQ6 455 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 GPR89BP0CG08 455 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 BTG1P62324 171 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 CLVS2Q5SYC1 327 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 C6orf132Q5T0Z8 1188 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 ACSM5Q6NUN0 579 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 ZNF529Q6P280 563 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 TPRA1Q86W33 373 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 C12orf45Q8N5I9 185 aaPredicted RBP14.32□□□□□ -0.12
SHH-201ENST00000297261 ERVMER34-1Q9H9K5 563 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 EPHA6Q9UF33 1036 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 HRH3Q9Y5N1 445 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 A0A0A6YYJ9 748 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 CASC3O15234 703 aaKnown RBP14.32□□□□□ -0.12
SHH-201ENST00000297261 PPP3CBP16298 524 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 ADH6P28332 368 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 YBX1P67809 324 aaKnown RBP14.32□□□□□ -0.12
SHH-201ENST00000297261 CHRNEQ04844 493 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 ENTPD8Q5MY95 495 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 CCNJQ5T5M9 372 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 FAHD1Q6P587 224 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 LEG1Q6P5S2 330 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 SVBPQ8N300 66 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 HRH4Q9H3N8 390 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 NARFLQ9H6Q4 476 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 FANCFQ9NPI8 374 aa14.32□□□□□ -0.12
SHH-201ENST00000297261 C14orf166Q9Y224 244 aaKnown RBP14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms