RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 GALNT5Q7Z7M9 940 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 FBXL14Q8N1E6 418 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 ZNF433Q8N7K0 673 aaPredicted RBP17.11■□□□□ 0.33
CLN3-262ENST00000637699 CCDC63Q8NA47 563 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 OR52N5Q8NH56 324 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 OR5W2Q8NH69 310 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 ADAMTS15Q8TE58 950 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 MTERF3Q96E29 417 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 DHRS9Q9BPW9 319 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 ACTRT3Q9BYD9 372 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 QRSL1Q9H0R6 528 aaKnown RBP17.11■□□□□ 0.33
CLN3-262ENST00000637699 C12orf65Q9H3J6 166 aaKnown RBP17.11■□□□□ 0.33
CLN3-262ENST00000637699 TUBB1Q9H4B7 451 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 DTNAQ9Y4J8 743 aa17.11■□□□□ 0.33
CLN3-262ENST00000637699 YLPM1P49750 1951 aaKnown RBP17.11■□□□□ 0.33
CLN3-262ENST00000637699 A0A1W2PR80 420 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 CIB4A0PJX0 185 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 ELOA3DA6NLF2 546 aaPredicted RBP17.1■□□□□ 0.33
CLN3-262ENST00000637699 ZNF724A8MTY0 619 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 PLIN3O60664 434 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 RAD51DO75771 328 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 NEFHP12036 1026 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 CPA3P15088 417 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 ASMTP46597 345 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 CCT3P49368 545 aaKnown RBP17.1■□□□□ 0.33
CLN3-262ENST00000637699 FABP6P51161 128 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 MLC1Q15049 377 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 ELOA3BQ3SY89 546 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 TIGD2Q4W5G0 525 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 SSX8Q7RTT4 187 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 R3HCC1LQ7Z5L2 792 aaKnown RBP17.1■□□□□ 0.33
CLN3-262ENST00000637699 UBE2J2Q8N2K1 259 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 MUC15Q8N387 334 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 TOR1AIP2Q8NFQ8 470 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 ELOA3Q8NG57 546 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 OR7A2PQ8NGA2 310 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 OXSMQ9NWU1 459 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 FAF1Q9UNN5 650 aaPredicted RBP17.1■□□□□ 0.33
CLN3-262ENST00000637699 MGAT4BQ9UQ53 548 aa17.1■□□□□ 0.33
CLN3-262ENST00000637699 GOLGA8QA0A0J9YX86 632 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 GOLGA8OA6NCC3 632 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 CCT8L1PA6NM43 557 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 GOLGA8NF8WBI6 632 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 LSM1O15116 133 aaKnown RBP17.09■□□□□ 0.33
CLN3-262ENST00000637699 ZNF264O43296 627 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 CYP7B1O75881 506 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 UBL4AP11441 157 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 BCKDHAP12694 445 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 SLC25A16P16260 332 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 CBFBQ13951 182 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 CCDC153Q494R4 210 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 SPDYE7PQ495Y7 208 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 LIPMQ5VYY2 423 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 CYB5R2Q6BCY4 276 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 C3orf33Q6P1S2 294 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 B3GLCTQ6Y288 498 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 FAM168AQ92567 244 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 ARL8AQ96BM9 186 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 SHARPINQ9H0F6 387 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 TMEM160Q9NX00 188 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 LPAR3Q9UBY5 353 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 ATP6V1HQ9UI12 483 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 TMED5Q9Y3A6 229 aa17.09■□□□□ 0.33
CLN3-262ENST00000637699 ANK2Q01484 3957 aa17.08■□□□□ 0.33
CLN3-262ENST00000637699 NUP214P35658 2090 aaPredicted RBP17.08■□□□□ 0.33
CLN3-262ENST00000637699 ESPNB1AK53 854 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 NPIPB9F8W1W9 429 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 SCAMP2O15127 329 aaKnown RBP17.08■□□□□ 0.32
CLN3-262ENST00000637699 EIF4E2O60573 245 aaKnown RBP17.08■□□□□ 0.32
CLN3-262ENST00000637699 CHEK2O96017 543 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 DHRS4L1P0CG22 281 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 LAMP1P11279 417 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 ZNF16P17020 682 aaPredicted RBP17.08■□□□□ 0.32
CLN3-262ENST00000637699 DDX5P17844 614 aaKnown RBP17.08■□□□□ 0.32
CLN3-262ENST00000637699 PTAFRP25105 342 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 CD40P25942 277 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 HPCAL1P37235 193 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 DIO1P49895 249 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 SRSF2Q01130 221 aaKnown RBP17.08■□□□□ 0.32
CLN3-262ENST00000637699 FBXW9Q5XUX1 488 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 KLHL17Q6TDP4 642 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 DDIASQ8IXT1 998 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 ARIH2OSQ8N7S6 290 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 OR56A1Q8NGH5 318 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 THUMPD3Q9BV44 507 aaKnown RBP17.08■□□□□ 0.32
CLN3-262ENST00000637699 C1QTNF6Q9BXI9 259 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 AMBRA1Q9C0C7 1298 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 SERINC1Q9NRX5 453 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 GPATCH2Q9NW75 528 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 DNAJC15Q9Y5T4 150 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 SLC25A15Q9Y619 301 aa17.08■□□□□ 0.32
CLN3-262ENST00000637699 SVEP1Q4LDE5 3571 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 M0R1B8 84 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 SULT2B1O00204 365 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 SHBGP04278 402 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 KRT16P08779 473 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 IGHV4-31P0DP07 118 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 CCT5P48643 541 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 PDZK1Q5T2W1 519 aa17.07■□□□□ 0.32
CLN3-262ENST00000637699 DEPDC4Q8N2C3 294 aa17.07■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 80 ms