RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 VKORC1Q9BQB6 163 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 GPATCH1Q9BRR8 931 aaKnown RBP16.33■□□□□ 0.2
CLN3-239ENST00000628023 CMTM6Q9NX76 183 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 ZNF337Q9Y3M9 751 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 AP4B1Q9Y6B7 739 aa16.33■□□□□ 0.2
CLN3-239ENST00000628023 TNFSF12-TNFSF13A0A0A6YY99 330 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 AHRRA9YTQ3 701 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 GRNP28799 593 aaKnown RBP16.32■□□□□ 0.2
CLN3-239ENST00000628023 PRKAR1BP31321 381 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 GZMMP51124 257 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 PSME3P61289 254 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 KRT72Q14CN4 511 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 TMEM44Q2T9K0 475 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 B3GNT6Q6ZMB0 384 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 CHMP1BQ7LBR1 199 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 ZNF550Q7Z398 422 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 GDF7Q7Z4P5 450 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 PATL1Q86TB9 770 aaKnown RBP16.32■□□□□ 0.2
CLN3-239ENST00000628023 CALHM3Q86XJ0 350 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 SLC15A3Q8IY34 581 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 BHLHE22Q8NFJ8 381 aaPredicted RBP16.32■□□□□ 0.2
CLN3-239ENST00000628023 FBXO27Q8NI29 283 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 SLC26A7Q8TE54 656 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 NPAS1Q99742 590 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 TMEM185BQ9H7F4 350 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 SPAG4Q9NPE6 437 aa16.32■□□□□ 0.2
CLN3-239ENST00000628023 APCP25054 2843 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 AP3D1O14617 1153 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 OPN1SWP03999 348 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 HOXD4P09016 255 aaPredicted RBP16.31■□□□□ 0.2
CLN3-239ENST00000628023 GKN3PP0CG01 181 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 CPN1P15169 458 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 ZNF708P17019 499 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 ELK4P28324 431 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 ADH6P28332 368 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 IDH2P48735 452 aaKnown RBP16.31■□□□□ 0.2
CLN3-239ENST00000628023 MNAT1P51948 309 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 CLDN18P56856 261 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 PCBP3P57721 371 aaKnown RBP16.31■□□□□ 0.2
CLN3-239ENST00000628023 EEFSECP57772 596 aaKnown RBP16.31■□□□□ 0.2
CLN3-239ENST00000628023 SESN3P58005 492 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 COPZ1P61923 177 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 PLAURQ03405 335 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 LIPEQ05469 1076 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 MERTKQ12866 999 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 EPS8Q12929 822 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 TMEM211Q6ICI0 200 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 POMZP3Q6PJE2 187 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 DHRS4L2Q6PKH6 230 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 CLIP4Q8N3C7 705 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 POC1BQ8TC44 478 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 ZNF583Q96ND8 569 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 TRIB1Q96RU8 372 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 PINK1Q9BXM7 581 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 ALG2Q9H553 416 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 NDE1Q9NXR1 346 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 KLHL28Q9NXS3 571 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 ADA2Q9NZK5 511 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 USP22Q9UPT9 525 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 HEATR5AQ86XA9 2040 aa16.31■□□□□ 0.2
CLN3-239ENST00000628023 PKDREJQ9NTG1 2253 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 ELOVL7A1L3X0 281 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 M0QX08 132 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 NME4O00746 187 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 GSTA4O15217 222 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 SFTPDP35247 375 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 RPS3AP61247 264 aaKnown RBP16.3■□□□□ 0.2
CLN3-239ENST00000628023 NCALDP61601 193 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 BCL2A1Q16548 175 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 ACSF3Q4G176 576 aaPredicted RBP16.3■□□□□ 0.2
CLN3-239ENST00000628023 C8orf82Q6P1X6 216 aaPredicted RBP16.3■□□□□ 0.2
CLN3-239ENST00000628023 C16orf89Q6UX73 402 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 NCCRP1Q6ZVX7 275 aaPredicted RBP16.3■□□□□ 0.2
CLN3-239ENST00000628023 GRAMD2AQ8IUY3 354 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 MICU2Q8IYU8 434 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 RPRMLQ8N4K4 120 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 SMYD1Q8NB12 490 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 ATP6V1C2Q8NEY4 427 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 KCTD14Q9BQ13 255 aaPredicted RBP16.3■□□□□ 0.2
CLN3-239ENST00000628023 SERINC1Q9NRX5 453 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 ACER3Q9NUN7 267 aa16.3■□□□□ 0.2
CLN3-239ENST00000628023 GJE1A6NN92 205 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 EIF1AYO14602 144 aaKnown RBP16.29■□□□□ 0.2
CLN3-239ENST00000628023 FRS3O43559 492 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 DNAJA2O60884 412 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 MFN2O95140 757 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 CLDN14O95500 239 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 OPN1LWP04000 364 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 PSMA4P25789 261 aaKnown RBP16.29■□□□□ 0.2
CLN3-239ENST00000628023 CLDN20P56880 219 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 RAC1P63000 192 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 ADORA2A-AS1P86434 159 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 DMTNQ08495 405 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 PMPCAQ10713 525 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 SELENBP1Q13228 472 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 VEZF1Q14119 521 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 LRRC23Q53EV4 343 aaPredicted RBP16.29■□□□□ 0.2
CLN3-239ENST00000628023 SLC25A53Q5H9E4 307 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 PPP4R4Q6NUP7 873 aa16.29■□□□□ 0.2
CLN3-239ENST00000628023 GRINAQ7Z429 371 aa16.29■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms