RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 APH1AQ96BI3 265 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 ZNF524Q96C55 264 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 FBXO17Q96EF6 278 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 C1orf159Q96HA4 380 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 TSSK3Q96PN8 268 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 PLA2G12AQ9BZM1 189 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 QRSL1Q9H0R6 528 aaKnown RBP12.9□□□□□ -0.34
PNKP-218ENST00000625299 REEP4Q9H6H4 257 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 EMC3Q9P0I2 261 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 NOSIPQ9Y314 301 aaKnown RBP12.9□□□□□ -0.34
PNKP-218ENST00000625299 ACTL7BQ9Y614 415 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 ARFGEF3Q5TH69 2177 aa12.9□□□□□ -0.34
PNKP-218ENST00000625299 IGHV4-61A0A0C4DH41 118 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 VWC2LB2RUY7 222 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 TCF21O43680 179 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 CYP7B1O75881 506 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 HMGN2P05204 90 aaKnown RBP12.89□□□□□ -0.35
PNKP-218ENST00000625299 DIO1P49895 249 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 MLC1Q15049 377 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 CR1LQ2VPA4 569 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 C9orf135Q5VTT2 229 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 C12orf54Q6X4T0 127 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 TRIM46Q7Z4K8 759 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 TOR1AIP2Q8NFQ8 470 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 ARL8AQ96BM9 186 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 FAM120BQ96EK7 910 aaKnown RBP12.89□□□□□ -0.35
PNKP-218ENST00000625299 DNAJA3Q96EY1 480 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 HOXD1Q9GZZ0 328 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 FKRPQ9H9S5 495 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 ASB6Q9NWX5 421 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 TAS2R16Q9NYV7 291 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 PTGDR2Q9Y5Y4 395 aa12.89□□□□□ -0.35
PNKP-218ENST00000625299 EXOC1LA0A1B0GW35 172 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 ATP6V1G2-DDX39BF2Z307 99 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 SULT2B1O00204 365 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 UBL4AP11441 157 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 ITGA2P17301 1181 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 APOBEC3AP31941 199 aaPredicted RBP12.88□□□□□ -0.35
PNKP-218ENST00000625299 SRP14P37108 136 aaKnown RBP12.88□□□□□ -0.35
PNKP-218ENST00000625299 FOXG1P55316 489 aaPredicted RBP12.88□□□□□ -0.35
PNKP-218ENST00000625299 PHC1P78364 1004 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 CBFBQ13951 182 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 TIGD2Q4W5G0 525 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 DCST2Q5T1A1 773 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 OR5W2Q8NH69 310 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 FOXN4Q96NZ1 517 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 SORCS2Q96PQ0 1159 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 STACQ99469 402 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 PIGUQ9H490 435 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 TNFRSF12AQ9NP84 129 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 DUSP22Q9NRW4 184 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 ACSS1Q9NUB1 689 aaPredicted RBP12.88□□□□□ -0.35
PNKP-218ENST00000625299 BAIAP2L1Q9UHR4 511 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 PYCARDQ9ULZ3 195 aa12.88□□□□□ -0.35
PNKP-218ENST00000625299 A0A087WUV0 522 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 NDUFS8O00217 210 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 ZNF264O43296 627 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 SPRY1O43609 319 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 TFPIP10646 304 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 SDC1P18827 310 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 CASQ1P31415 396 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 FRKP42685 505 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 ATP12AP54707 1039 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 RPL38P63173 70 aaKnown RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 CSNK2A1P68400 391 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 TP53BP2Q13625 1128 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 KIAA0040Q15053 153 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 GABRA6Q16445 453 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 SLC25A53Q5H9E4 307 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 EXOSC6Q5RKV6 272 aaKnown RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 CLEC6AQ6EIG7 209 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 ABLIM2Q6H8Q1 611 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 MEX3DQ86XN8 651 aaKnown RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 RELL1Q8IUW5 271 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 RFLNBQ8N5W9 214 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 ANKS4BQ8N8V4 417 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 OR52E4Q8NGH9 312 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 ADAMTS15Q8TE58 950 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 CCT7Q99832 543 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 VRK1Q99986 396 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 SERINC1Q9NRX5 453 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 SIRT3Q9NTG7 399 aaPredicted RBP12.87□□□□□ -0.35
PNKP-218ENST00000625299 C1orf109Q9NX04 203 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 FIS1Q9Y3D6 152 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 DTNAQ9Y4J8 743 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 KCNE3Q9Y6H6 103 aa12.87□□□□□ -0.35
PNKP-218ENST00000625299 CFPP27918 469 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 SNRPD2P62316 118 aaKnown RBP12.86□□□□□ -0.35
PNKP-218ENST00000625299 MERTKQ12866 999 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 SPDYE7PQ495Y7 208 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 SYT14P1Q58G82 188 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 CFAP157Q5JU67 520 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 OR7E24Q6IFN5 339 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 TIFABQ6ZNK6 161 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 TMPPEQ6ZT21 453 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 SLC46A3Q7Z3Q1 461 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 LCA5Q86VQ0 697 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 IFT81Q8WYA0 676 aa12.86□□□□□ -0.35
PNKP-218ENST00000625299 ZHX1-C8orf76Q96EF9 292 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms