RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 IL11P20809 199 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ACAA2P42765 397 aaKnown RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 IDH2P48735 452 aaKnown RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 SLC7A2P52569 658 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 TPD52P55327 224 aaPredicted RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 DLX5P56178 289 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 PSME3P61289 254 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 RAC1P63000 192 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ADORA2A-AS1P86434 159 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 DMTNQ08495 405 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 EPS8Q12929 822 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 VEZF1Q14119 521 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 SF3B4Q15427 424 aaKnown RBP eCLIP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 INTS11Q5TA45 600 aaKnown RBP14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ADGRE4PQ86SQ3 457 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 GGNQ86UU5 652 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 COMTD1Q86VU5 262 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ARMC8Q8IUR7 673 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 UBQLNLQ8IYU4 475 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 OR2T12Q8NG77 320 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF563Q8TA94 476 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 SSC4DQ8WTU2 575 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 TUBA1CQ9BQE3 449 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 ACER3Q9NUN7 267 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 STOML1Q9UBI4 398 aa14.92□□□□□ -0.02
CCDC28A-202ENST00000611852 NCOA6Q14686 2063 aaPredicted RBP14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 KDM4EB2RXH2 506 aaPredicted RBP14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 SEC14L5O43304 696 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 EPPINO95925 133 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 PRG2P13727 222 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 LIPEQ05469 1076 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 PMPCAQ10713 525 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 GLIPR1L2Q4G1C9 344 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 TMEM211Q6ICI0 200 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 RPTNQ6XPR3 784 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 SEM1Q6ZVN7 128 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 CCDC80Q76M96 950 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 PATL1Q86TB9 770 aaKnown RBP14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 MEIOBQ8N635 442 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 BHLHE22Q8NFJ8 381 aaPredicted RBP14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 SMPDL3BQ92485 455 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 SLC35B4Q969S0 331 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 TMEM185BQ9H7F4 350 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 GMPR2Q9P2T1 348 aaKnown RBP14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 ABCD2Q9UBJ2 740 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 DOPEY1Q5JWR5 2465 aa14.91□□□□□ -0.02
CCDC28A-202ENST00000611852 FRS3O43559 492 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 OPN1SWP03999 348 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 OPN1LWP04000 364 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 GLI4P10075 376 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 ME2P23368 584 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 CRYBA2P53672 197 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 NUP107P57740 925 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 NSUN5P2Q63ZY6 315 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 PLEKHM3Q6ZWE6 761 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 ZNF550Q7Z398 422 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 GRINAQ7Z429 371 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 LILRA2Q8N149 483 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 SMYD1Q8NB12 490 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 TAMM41Q96BW9 452 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 TRIB1Q96RU8 372 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 PINK1Q9BXM7 581 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 SPAG4Q9NPE6 437 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 KIAA1549Q9HCM3 1950 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 BAHCC1Q9P281 2608 aa14.9□□□□□ -0.02
CCDC28A-202ENST00000611852 ARHGAP21Q5T5U3 1957 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 ELOVL7A1L3X0 281 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 CD8B2A6NJW9 211 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 CLCA1A8K7I4 914 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 GP1BBP13224 206 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 UQCRBP14927 111 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 APOBEC1P41238 236 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 EEFSECP57772 596 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 MERTKQ12866 999 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 SELENBP1Q13228 472 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 DUSP7Q16829 419 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 CTU2Q2VPK5 515 aaKnown RBP14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 LACC1Q8IV20 430 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 MICU2Q8IYU8 434 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 ADGRG7Q96K78 797 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 ALG2Q9H553 416 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 CALHM2Q9HA72 323 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 TMEM181Q9P2C4 612 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 PRDM4Q9UKN5 801 aa14.89□□□□□ -0.03
CCDC28A-202ENST00000611852 EIF1AYO14602 144 aaKnown RBP14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 ADAMDEC1O15204 470 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 SHC1P29353 583 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 SFTPDP35247 375 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC1A3P43003 542 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 KCNJ5P48544 419 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 GSK3BP49841 420 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 MNAT1P51948 309 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 SLC25A3Q00325 362 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 HOXC5Q00444 222 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 POMZP3Q6PJE2 187 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 PLXDC2Q6UX71 529 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 ESPNLQ6ZVH7 1005 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 PGAM4Q8N0Y7 254 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 GPR32P1Q8NGA4 272 aa14.88□□□□□ -0.03
CCDC28A-202ENST00000611852 ITLN2Q8WWU7 325 aaPredicted RBP14.88□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms