RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 ATP6AP2A0A1C7CYW4 349 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 A0A1W2PPM1 405 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 PINLYPA6NC86 204 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 C5orf51A6NDU8 294 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 ARHGAP42A6NI28 874 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 HNRNPCL3B7ZW38 293 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CDC7O00311 574 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SELENOFO60613 162 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 LDB3O75112 727 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 ATP6AP2O75787 350 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 POP7O75817 140 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 EPPINO95925 133 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 IGHG3P01860 377 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SERPING1P05155 500 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SOD3P08294 240 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 HNRNPCL4P0DMR1 293 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 GZMAP12544 262 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SLC25A16P16260 332 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 UGT2B7P16662 529 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 USF1P22415 310 aaPredicted RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 NDUFS1P28331 727 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 MAGEA5P43359 124 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 MTIF2P46199 727 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 ATP5OP48047 213 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 TRPC1P48995 793 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SPINT3P49223 89 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CENPAP49450 140 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 NUDT6P53370 316 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 RHAGQ02094 409 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 GBE1Q04446 702 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 HSPB3Q12988 150 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CHIT1Q13231 466 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SNX1Q13596 522 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SLC25A52Q3SY17 297 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 ACSF3Q4G176 576 aaPredicted RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 C6orf10Q5SRN2 563 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 C16orf87Q6PH81 154 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 FIP1L1Q6UN15 594 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM205Q6UW68 189 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM182Q6ZP80 229 aaPredicted RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SLC26A9Q7LBE3 791 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CPEB2Q7Z5Q1 589 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 RPS19BP1Q86WX3 136 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 KLBQ86Z14 1044 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CFAP206Q8IYR0 622 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SNX31Q8N9S9 440 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 ACVR1CQ8NER5 493 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SLC24A4Q8NFF2 622 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 OR52E1Q8NGJ3 308 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 TMEM174Q8WUU8 243 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 PIH1D2Q8WWB5 315 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 METTL21AQ8WXB1 218 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 GLYATL1Q969I3 302 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 NT5C3BQ969T7 300 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 BSCL2Q96G97 398 aaPredicted RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 ADAD1Q96M93 576 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SPATA13Q96N96 652 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CCT8L2Q96SF2 557 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SSX3Q99909 188 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 TRIM2Q9C040 744 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CHRNA10Q9GZZ6 450 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 THAP2Q9H0W7 228 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 PPIL3Q9H2H8 161 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 CLSTN2Q9H4D0 955 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 TFB2MQ9H5Q4 396 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 RNPEPL1Q9HAU8 725 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 BPIFA1Q9NP55 256 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 PPANQ9NQ55 473 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SPRR3Q9UBC9 169 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 SEC23IPQ9Y6Y8 1000 aaKnown RBP3.82□□□□□ -1.8
LINC00540-201ENST00000611481 COLEC10Q9Y6Z7 277 aa3.82□□□□□ -1.8
LINC00540-201ENST00000611481 IGLV3-12A0A075B6K2 115 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 A0A0A6YYC8 382 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 A0A0J9YY10 115 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 A0A0J9YYE9 177 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TCRBV7S3A2A0A539 114 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 C1orf226A1L170 272 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 CTAGE15A4D2H0 777 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 I3L1I5 382 aaPredicted RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 EBAG9O00559 213 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TO15178 435 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 MAGEB3O15480 346 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 KIF5CO60282 957 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 KCNJ13O60928 360 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 OR6B1O95007 311 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 AK1P00568 194 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TRBC1P01850 177 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 KRT6BP04259 564 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 KRT8P05787 483 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RFPL3SP0C7P2 107 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SLC35G4P0C7Q5 338 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 CTAGE8P0CG41 777 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 NR2F2P24468 414 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 RYKP34925 604 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SERPINB6P35237 376 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 TIMP3P35625 211 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 ANP32AP39687 249 aaKnown RBP3.81□□□□□ -1.8
LINC00540-201ENST00000611481 SOX2P48431 317 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 KRT6CP48668 564 aa3.81□□□□□ -1.8
LINC00540-201ENST00000611481 HLCSP50747 726 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 117.4 ms