RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CCR4P51679 360 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 SESN3P58005 492 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 MRPL2Q5T653 305 aaKnown RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 RNF220Q5VTB9 566 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 C3orf33Q6P1S2 294 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 CHMP1BQ7LBR1 199 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 HMGN2P46Q86SG4 172 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 RETREG3Q86VR2 466 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 LILRA2Q8N149 483 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 CNOT9Q92600 299 aaKnown RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 CPPED1Q9BRF8 314 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 CCDC106Q9BWC9 280 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 PIGMQ9H3S5 423 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 TMEM185BQ9H7F4 350 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 ACER3Q9NUN7 267 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 MRGBPQ9NV56 204 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 LEF1Q9UJU2 399 aaPredicted RBP14.47□□□□□ -0.09
TRIM28-213ENST00000598355 PACSIN3Q9UKS6 424 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 CHST2Q9Y4C5 530 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 PDZD2O15018 2839 aa14.47□□□□□ -0.09
TRIM28-213ENST00000598355 CDHR4A6H8M9 788 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 TNFSF11O14788 317 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 SNRPB2P08579 225 aaKnown RBP14.46□□□□□ -0.09
TRIM28-213ENST00000598355 PEX19P40855 299 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 KIR2DL2P43627 348 aaPredicted RBP14.46□□□□□ -0.09
TRIM28-213ENST00000598355 EIF1AXP47813 144 aaKnown RBP14.46□□□□□ -0.09
TRIM28-213ENST00000598355 SLC6A8P48029 635 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 SORDQ00796 357 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 ZNF239Q16600 458 aaKnown RBP14.46□□□□□ -0.09
TRIM28-213ENST00000598355 LIN52Q52LA3 116 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 PLEKHM3Q6ZWE6 761 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 PEX5LQ8IYB4 626 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 RNF128Q8TEB7 428 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 TMEM234Q8WY98 164 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 TMEM38AQ9H6F2 299 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 SLC24A3Q9HC58 644 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 KCNN3Q9UGI6 736 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 PRDM4Q9UKN5 801 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 ABCA4P78363 2273 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 CSMD1Q96PZ7 3565 aa14.46□□□□□ -0.09
TRIM28-213ENST00000598355 HRNRQ86YZ3 2850 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 A0A0G2JPF8 293 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 GJE1A6NN92 205 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 HNRNPCL2B2RXH8 293 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 HNRNPCL3B7ZW38 293 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 EEF1E1-BLOC1S5C9J1V9 151 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 MSTNO14793 375 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 EEF1E1O43324 174 aaKnown RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 CXCL13O43927 109 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 HNRNPCL1O60812 293 aaKnown RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 SS18L1O75177 396 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 CGAP01215 116 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 HNRNPCL4P0DMR1 293 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 IL7RP16871 459 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 SSTR2P30874 369 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 SFTPDP35247 375 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 AGFG1P52594 562 aaKnown RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 GNA13Q14344 377 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 RPS26P11Q5JNZ5 115 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 HBMQ6B0K9 141 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 VWA1Q6PCB0 445 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 ZNF836Q6ZNA1 936 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 GRINAQ7Z429 371 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 P4HA3Q7Z4N8 544 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 DHDDSQ86SQ9 333 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 SLC25A43Q8WUT9 341 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 C10orf82Q8WW14 230 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 CPNE4Q96A23 557 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 STARD4Q96DR4 205 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 SRXN1Q9BYN0 137 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 KLHL14Q9P2G3 628 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 MCTS1Q9ULC4 181 aaKnown RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 CORO2BQ9UQ03 480 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 ZNF443Q9Y2A4 671 aaPredicted RBP14.45□□□□□ -0.1
TRIM28-213ENST00000598355 POLQO75417 2590 aa14.45□□□□□ -0.1
TRIM28-213ENST00000598355 ANKRD17O75179 2603 aaKnown RBP14.44□□□□□ -0.1
TRIM28-213ENST00000598355 A8MXE2 369 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 AP3D1O14617 1153 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 CYP7B1O75881 506 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 PGM3O95394 542 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 VIMP08670 466 aaKnown RBP14.44□□□□□ -0.1
TRIM28-213ENST00000598355 CD8BP10966 210 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 ETS2P15036 469 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 APOBEC1P41238 236 aaKnown RBP14.44□□□□□ -0.1
TRIM28-213ENST00000598355 ARFIP2P53365 341 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 EPS8Q12929 822 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 ADRM1Q16186 407 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 SGCBQ16585 318 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 ZSWIM7Q19AV6 140 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 RUNDC3AQ59EK9 446 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 COQ5Q5HYK3 327 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 PDSS1Q5T2R2 415 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 FAM214BQ7L5A3 538 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 VRK2Q86Y07 508 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 ZNF440Q8IYI8 595 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 OR52P1PQ8NH57 321 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 BBS10Q8TAM1 723 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 MAL2Q969L2 176 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 SLC35B4Q969S0 331 aa14.44□□□□□ -0.1
TRIM28-213ENST00000598355 LRRC46Q96FV0 321 aa14.44□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms