RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 ZNF550Q7Z398 422 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 MRGPRGQ86SM5 289 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 CALHM3Q86XJ0 350 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 GRAMD2AQ8IUY3 354 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 LACC1Q8IV20 430 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 CLIP4Q8N3C7 705 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 HOPXQ9BPY8 73 aaPredicted RBP17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 TMEM185BQ9H7F4 350 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 ACER3Q9NUN7 267 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 COQ3Q9NZJ6 369 aa17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 PLEKHB1Q9UF11 243 aaPredicted RBP17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 INTS1Q8N201 2190 aaKnown RBP17.73■□□□□ 0.43
SHKBP1-214ENST00000597396 PRORSD1PA6NEY8 169 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 WIPF3A6NGB9 483 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 CLCA1A8K7I4 914 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 EIF1AYO14602 144 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 AP3D1O14617 1153 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 GKN3PP0CG01 181 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 PRKAR1BP31321 381 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 IDH2P48735 452 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 SUCLG1P53597 346 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 CLDN20P56880 219 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 MERTKQ12866 999 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 EPS8Q12929 822 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 NSUN5P2Q63ZY6 315 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 HIST2H2BCQ6DN03 193 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 PATL1Q86TB9 770 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 ARMC8Q8IUR7 673 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 ZNF808Q8N4W9 903 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 ATP6V1C2Q8NEY4 427 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 BHLHE22Q8NFJ8 381 aaPredicted RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 ZNF524Q96C55 264 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 REXO5Q96IC2 774 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 GPATCH1Q9BRR8 931 aaKnown RBP17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 TAGLN3Q9UI15 199 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 SLC13A4Q9UKG4 626 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 ICE1Q9Y2F5 2266 aa17.72■□□□□ 0.43
SHKBP1-214ENST00000597396 CD8B2A6NJW9 211 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 CCT8L1PA6NM43 557 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 FAM220BPB1ANY3 271 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 H0YC42 278 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 ADAM11O75078 769 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 NTN1O95631 604 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 OPN1LWP04000 364 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 IL11P20809 199 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SFTPDP35247 375 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SLC7A2P52569 658 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 TPD52P55327 224 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 PCBP3P57721 371 aaKnown RBP17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SELENBP1Q13228 472 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 FAM91A1Q658Y4 838 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 POMZP3Q6PJE2 187 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 DHRS4L2Q6PKH6 230 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 XKRXQ6PP77 449 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 PLEKHM3Q6ZWE6 761 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SLC15A3Q8IY34 581 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 LILRA2Q8N149 483 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 OR2T12Q8NG77 320 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 BCAS4Q8TDM0 211 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SLC26A7Q8TE54 656 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 ITLN2Q8WWU7 325 aaPredicted RBP17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SDCCAG3Q96C92 435 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 ZNF583Q96ND8 569 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 CALHM2Q9HA72 323 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 SERINC1Q9NRX5 453 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 ARL8BQ9NVJ2 186 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 CMTM6Q9NX76 183 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 CHST2Q9Y4C5 530 aa17.71■□□□□ 0.43
SHKBP1-214ENST00000597396 GJE1A6NN92 205 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 KDM4EB2RXH2 506 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 M0QX08 132 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 ETV2O00321 342 aaPredicted RBP17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 FAAHO00519 579 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 IL2RAP01589 272 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 OPN1SWP03999 348 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 COPZ1P61923 177 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 SGCBQ16585 318 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 PDSS1Q5T2R2 415 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 RIPPLY2Q5TAB7 128 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 ESPNLQ6ZVH7 1005 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 GRINAQ7Z429 371 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 P4HA3Q7Z4N8 544 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 GGNQ86UU5 652 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 ASB5Q8WWX0 329 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 KLHL15Q96M94 604 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 PINK1Q9BXM7 581 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 KLHL28Q9NXS3 571 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 USP22Q9UPT9 525 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 RNF6Q9Y252 685 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 UTP20O75691 2785 aaKnown RBP17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 DOPEY1Q5JWR5 2465 aa17.7■□□□□ 0.42
SHKBP1-214ENST00000597396 TNFSF11O14788 317 aa17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 FRS3O43559 492 aa17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 EFNA2O43921 213 aa17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 TPST1O60507 370 aa17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 MFN2O95140 757 aa17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 APOBEC1P41238 236 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 ACAA2P42765 397 aaKnown RBP17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 HTR3AP46098 478 aa17.69■□□□□ 0.42
SHKBP1-214ENST00000597396 EIF1AXP47813 144 aaKnown RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms