RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 P3H2Q8IVL5 708 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 CCDC103Q8IW40 242 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 OR11G2Q8NGC1 345 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 OR8D4Q8NGM9 314 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 RHOXF1Q8NHV9 184 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 TEX47Q8TBZ9 253 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 HGDQ93099 445 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 C3orf49Q96BT1 292 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 MPP4Q96JB8 637 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 KLHDC3Q9BQ90 382 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 DPH1Q9BZG8 443 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 IRF2BPLQ9H1B7 796 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 SLC25A19Q9HC21 320 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 ATP13A2Q9NQ11 1180 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 TCFL5Q9UL49 500 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 FARSAQ9Y285 508 aaKnown RBP9.62□□□□□ -0.87
SS18-217ENST00000580958 TMEM5Q9Y2B1 443 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 MED31Q9Y3C7 131 aa9.62□□□□□ -0.87
SS18-217ENST00000580958 RIF1Q5UIP0 2472 aaKnown RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 FREM3P0C091 2139 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 NSG1A0A0A6YYJ2 146 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 RNF223E7ERA6 249 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ADAM10O14672 748 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 HCRTR2O43614 444 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 GMFGO60234 142 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 RAD1O60671 282 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 OR2J2O76002 312 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 NAGAP17050 411 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 FUT1P19526 365 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ENDOUP21128 410 aaKnown RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 RBM34P42696 430 aaKnown RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 SLC6A8P48029 635 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ALDH3B2P48448 385 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 NR1H2P55055 460 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 CTBP2P56545 445 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 CXCR4P61073 352 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 RPS15P62841 145 aaKnown RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 EXT1Q16394 746 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 NADK2Q4G0N4 442 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 PLAG1Q6DJT9 500 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ACSM5Q6NUN0 579 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 CASP12Q6UXS9 341 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 LINC00114Q6XXX2 140 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 PTCHD4Q6ZW05 846 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 NUP54Q7Z3B4 507 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 SATL1Q86VE3 508 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ESX1Q8N693 406 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 M1APQ8TC57 530 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 SLC22A8Q8TCC7 542 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 DNAJA4Q8WW22 397 aaPredicted RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 ZNF426Q9BUY5 554 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 TSSK6Q9BXA6 273 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ZNF160Q9HCG1 818 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 MMP25Q9NPA2 562 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 MEPEQ9NQ76 525 aaPredicted RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 C20orf141Q9NUB4 165 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 TBC1D23Q9NUY8 699 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 PAK1IP1Q9NWT1 392 aaPredicted RBP9.61□□□□□ -0.87
SS18-217ENST00000580958 SCN3BQ9NY72 215 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 TVP23BQ9NYZ1 205 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 MYOTQ9UBF9 498 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 TPRKBQ9Y3C4 175 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 CDH10Q9Y6N8 788 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 CUL9Q8IWT3 2517 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 ZNF292O60281 2723 aa9.61□□□□□ -0.87
SS18-217ENST00000580958 MED13Q9UHV7 2174 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 A0A087WUJ7 227 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 A0A1W2PQ72 361 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ELOA3DA6NLF2 546 aaPredicted RBP9.6□□□□□ -0.87
SS18-217ENST00000580958 EFCAB9A8MZ26 197 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 PTGES3LE9PB15 166 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 MASP2O00187 686 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 CDC42EP2O14613 210 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 MPZL2O60487 215 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 HTR1AP08908 422 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 FBXO45P0C2W1 286 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 F8A1P23610 371 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 DLSTP36957 453 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 GIPRP48546 466 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 SMSP52788 366 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 NUDT6P53370 316 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 CDK5Q00535 292 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 TEKQ02763 1124 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 CRYZQ08257 329 aaKnown RBP9.6□□□□□ -0.87
SS18-217ENST00000580958 ELOA3BQ3SY89 546 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 CLEC12AQ5QGZ9 265 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 FOXB2Q5VYV0 432 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ZNF620Q6ZNG0 422 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 KCTD8Q6ZWB6 473 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 TMPRSS11FQ6ZWK6 438 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ATG4DQ86TL0 474 aaPredicted RBP9.6□□□□□ -0.87
SS18-217ENST00000580958 CDK20Q8IZL9 346 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 CLDN22Q8N7P3 220 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 TCEANCQ8N8B7 351 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 NLGN4YQ8NFZ3 816 aaPredicted RBP9.6□□□□□ -0.87
SS18-217ENST00000580958 ELOA3Q8NG57 546 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 OR13C2Q8NGS9 318 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 OR4Q3Q8NH05 313 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 B4GALNT2Q8NHY0 566 aa9.6□□□□□ -0.87
SS18-217ENST00000580958 ZNF563Q8TA94 476 aa9.6□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms