RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 NHSL2Q5HYW2 709 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 GRINAQ7Z429 371 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 ZNF843Q8N446 348 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 LSMEM1Q8N8F7 131 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 POLR2J2Q9GZM3 115 aaKnown RBP15.47■□□□□ 0.07
NUP88-210ENST00000574867 POLR2J3Q9H1A7 115 aaKnown RBP15.47■□□□□ 0.07
NUP88-210ENST00000574867 AQP12BA6NM10 295 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 AQP7O14520 342 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 PRKD3O94806 890 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 ACTL6AO96019 429 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 PRB1P04280 392 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 IFNW1P05000 195 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 GFRA1P56159 465 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 B3GALT5-AS1P59052 145 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 LACC1Q8IV20 430 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 AQP12AQ8IXF9 295 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 OR10Q1Q8NGQ4 319 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 PYURFQ96I23 114 aa15.47■□□□□ 0.07
NUP88-210ENST00000574867 OR2M5A3KFT3 312 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 OR14I1A6ND48 311 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 CIB2O75838 187 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 C1QL1O75973 258 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 TNFRSF1BP20333 461 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 TCEA1P23193 301 aaKnown RBP15.46■□□□□ 0.07
NUP88-210ENST00000574867 HTR2AP28223 471 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 HOXC5Q00444 222 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 NPTX1Q15818 432 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 PLEKHM3Q6ZWE6 761 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 CADM2Q8N3J6 435 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 OR4D11Q8NGI4 311 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 POC1BQ8TC44 478 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 RAB3IPQ96QF0 476 aaPredicted RBP15.46■□□□□ 0.07
NUP88-210ENST00000574867 MCHR1Q99705 422 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 WFDC6Q9BQY6 131 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 TMEM27Q9HBJ8 222 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 RPS6KB2Q9UBS0 482 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 FREM3P0C091 2139 aa15.46■□□□□ 0.07
NUP88-210ENST00000574867 TCRBV5S2A0A599 114 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 PSMA4P25789 261 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 APOBEC1P41238 236 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 OR1E2P47887 323 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 MERTKQ12866 999 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 ENPP6Q6UWR7 440 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 FAM86B1Q8N7N1 296 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 UTP4Q969X6 686 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 SARAFQ96BY9 339 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 ZNF524Q96C55 264 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 STOML1Q9UBI4 398 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 SLC6A5Q9Y345 797 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 SPENQ96T58 3664 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 POLR2HP52434 150 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 SELENBP1Q13228 472 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 ZNF800Q2TB10 664 aaPredicted RBP eCLIP15.45■□□□□ 0.06
NUP88-210ENST00000574867 SWT1Q5T5J6 900 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 C1orf146Q5VVC0 180 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 ZNF613Q6PF04 617 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 DEF8Q6ZN54 512 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 PRICKLE2Q7Z3G6 844 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 RBM45Q8IUH3 476 aaKnown RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 ST6GALNAC3Q8NDV1 305 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 DNAJA4Q8WW22 397 aaPredicted RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 UGT2B28Q9BY64 529 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 ADAM19Q9H013 955 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 C12orf10Q9HB07 376 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 SPIN1Q9Y657 262 aaPredicted RBP15.45■□□□□ 0.06
NUP88-210ENST00000574867 V9GYQ6 96 aa15.45■□□□□ 0.06
NUP88-210ENST00000574867 KALRNO60229 2985 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 ZNF407Q9C0G0 2248 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 SHANK1Q9Y566 2161 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 A0A1B0GTH9 108 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 SHISA8B8ZZ34 492 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 TPST2O60704 377 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 SEMG1P04279 462 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 HOXB6P17509 224 aaKnown RBP15.44■□□□□ 0.06
NUP88-210ENST00000574867 MAP2K6P52564 334 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 FOXK1P85037 733 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 OR1Q1Q15612 314 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 ENTPD8Q5MY95 495 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 VASNQ6EMK4 673 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 C3orf33Q6P1S2 294 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 GFRALQ6UXV0 394 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 PHF10Q8WUB8 498 aaKnown RBP15.44■□□□□ 0.06
NUP88-210ENST00000574867 ABTB1Q969K4 478 aaPredicted RBP15.44■□□□□ 0.06
NUP88-210ENST00000574867 C3orf49Q96BT1 292 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 NPAS1Q99742 590 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 MAGIXQ9H6Y5 334 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 SERINC1Q9NRX5 453 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 SELENONQ9NZV5 590 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 SPRR3Q9UBC9 169 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 AP4B1Q9Y6B7 739 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 CHD6Q8TD26 2715 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 A0A0B4J2E0 115 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 A0A1B0GX12 115 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 WISP2O76076 250 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 BMP7P18075 431 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 POU3F2P20265 443 aaPredicted RBP15.44■□□□□ 0.06
NUP88-210ENST00000574867 TACR3P29371 465 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 HSF1Q00613 529 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 RBPJQ06330 500 aa15.44■□□□□ 0.06
NUP88-210ENST00000574867 CRYZQ08257 329 aaKnown RBP15.44■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms